HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:71.6 nTPM
GTEx:14.2 nTPM
FANTOM5:69.8 Scaled Tags Per Million
Pig:21.4 nTPM
Mouse:26.0 nTPM
Allen mouse:2.4 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA054497
Glial cells Not detected
Neuronal cells Not detected


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 71.6
Sample id Sample description nTPM
Hippocampus
nTPM: 68.5
1911 Female, age 85, right hemisphere 74.3
2529 Female, age 94, left hemisphere 72.5
2148 Female, age 91, left hemisphere 67.5
2621 Female, age 67, right hemisphere 67.2
1898 Male, age 80, left hemisphere 66.2
1855 Male, age 76, left hemisphere 63.4
Dentate gyrus
nTPM: 64.5
1927 Female, age 91, both hemispheres 69.8
2528 Male, age 74, both hemispheres 67.0
2010 Male, age 76, both hemispheres 63.4
2531 Female, age 67, both hemispheres 63.0
2246 Female, age 85, both hemispheres 62.5
2530 Female, age 94, left hemisphere 61.0
Entorhinal gyrus
nTPM: 69.9
2613 Female, age 94, left hemisphere 75.7
2764 Male, age 80, right hemisphere 73.1
1787 Male, age 76, left hemisphere 70.9
1938 Female, age 85, left hemisphere 68.3
2686 Male, age 75, right hemisphere 66.5
2117 Female, age 91, right hemisphere 64.8
Hippocampus, CA1
nTPM: 68.8
2749 Male, age 80, left hemisphere 86.5
2527 Male, age 74, both hemispheres 68.3
2082 Female, age 91, right hemisphere 65.1
1873 Female, age 85, both hemispheres 64.0
2045 Male, age 76, both hemispheres 59.9
Hippocampus, CA2
nTPM: 65.7
1963 Male, age 80, left hemisphere 71.1
1892 Male, age 76, both hemispheres 70.3
2437 Female, age 94, left hemisphere 68.9
2113 Female, age 91, right hemisphere 68.1
2249 Male, age 74, both hemispheres 59.3
1940 Female, age 85, left hemisphere 56.7
Hippocampus, CA3
nTPM: 71.6
2137 Male, age 80, left hemisphere 90.5
2861 Female, age 67, both hemispheres 76.1
1867 Male, age 76, both hemispheres 70.0
1891 Female, age 85, both hemispheres 69.8
2436 Male, age 74, both hemispheres 64.3
2620 Female, age 94, left hemisphere 58.9
Parahippocampal cortex
nTPM: 66.7
2245 Female, age 91, both hemispheres 75.9
2018 Male, age 76, both hemispheres 70.8
2622 Female, age 67, right hemisphere 70.2
2532 Female, age 72, left hemisphere 68.1
1933 Female, age 85, both hemispheres 67.4
2250 Female, age 67, right hemisphere 65.8
1990 Female, age 91, right hemisphere 65.6
2692 Male, age 74, both hemispheres 63.8
1850 Male, age 80, both hemispheres 60.1
2693 Female, age 94, both hemispheres 59.5
Perirhinal gyrus
nTPM: 62.8
2521 Female, age 94, right hemisphere 66.3
1847 Female, age 91, left hemisphere 66.1
1794 Male, age 80, right hemisphere 62.0
2848 Male, age 76, right hemisphere 61.9
1841 Female, age 85, right hemisphere 57.8
Subiculum
nTPM: 69.8
2042 Male, age 76, both hemispheres 73.4
2438 Female, age 94, left hemisphere 72.5
1901 Male, age 80, both hemispheres 72.2
1977 Female, age 85, both hemispheres 68.4
2729 Female, age 91, right hemisphere 66.6
2619 Male, age 74, both hemispheres 65.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 14.2
Samples: 197

Max nTPM: 23.4
Min nTPM: 6.5
Std nTPM: 2.6
Median nTPM: 13.8
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 23.4
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 22.9
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 22.1
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 19.8
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 19.8
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 19.5
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 19.5
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 19.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 18.9
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 18.7
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 18.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 69.8
FF:10153-102I9 76 years, female 74.1
FF:10169-103B7 60 years, female 65.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 21.4
Pig sample Sample description nTPM
Subiculum
nTPM: 16.7
Samples: 4

Max nTPM: 19.1
Min nTPM: 15.5
Sample A Female 19.1
Sample B Female 16.1
Sample C Male 16.0
Sample D Male 15.5
Dorsal hippocampus
nTPM: 21.4
Samples: 4

Max nTPM: 25.6
Min nTPM: 17.8
Sample A Female 25.6
Sample B Female 22.5
Sample C Male 19.6
Sample D Male 17.8
Entorhinal cortex
nTPM: 18.8
Samples: 4

Max nTPM: 19.4
Min nTPM: 18.3
Sample A Female 19.4
Sample B Female 18.5
Sample C Male 18.3
Sample D Male 18.9
Ventral hippocampus
nTPM: 20.1
Samples: 4

Max nTPM: 23.4
Min nTPM: 15.8
Sample A Female 19.3
Sample B Female 15.8
Sample C Male 21.8
Sample D Male 23.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 26.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 26.0
Samples: 4

Max nTPM: 29.1
Min nTPM: 22.9
Sample A Male 25.4
Sample B Male 26.6
Sample C Female 22.9
Sample D Female 29.1
Hippocampal formation
nTPM: 21.0
Samples: 4

Max nTPM: 22.9
Min nTPM: 18.8
Sample A Male 18.8
Sample B Male 20.1
Sample C Female 22.9
Sample D Female 22.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.4
69353627 Antisense, RP_050412_02_D06, Mouse strain C57BL/6J (56 days, male) 2.4

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