HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: Low
RNA expressioni
Consensus:35.6 nTPM
HPA Brain:36.4 nTPM
GTEx:35.6 nTPM
FANTOM5:33.2 Scaled Tags Per Million
Pig:12.6 nTPM
Mouse:48.3 nTPM
Allen mouse:1.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA007342
Glial cells Medium
Neuronal cells Low


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.4
Sample id Sample description nTPM
Hippocampus
nTPM: 35.5
1855 Male, age 76, left hemisphere 42.3
1898 Male, age 80, left hemisphere 39.9
2148 Female, age 91, left hemisphere 35.2
2621 Female, age 67, right hemisphere 32.2
2529 Female, age 94, left hemisphere 32.0
1911 Female, age 85, right hemisphere 31.3
Dentate gyrus
nTPM: 33.6
2010 Male, age 76, both hemispheres 38.6
2530 Female, age 94, left hemisphere 37.1
2528 Male, age 74, both hemispheres 34.5
1927 Female, age 91, both hemispheres 31.2
2246 Female, age 85, both hemispheres 30.5
2531 Female, age 67, both hemispheres 29.4
Entorhinal gyrus
nTPM: 36.4
2764 Male, age 80, right hemisphere 40.6
1938 Female, age 85, left hemisphere 37.7
2686 Male, age 75, right hemisphere 37.5
2613 Female, age 94, left hemisphere 35.6
2117 Female, age 91, right hemisphere 34.7
1787 Male, age 76, left hemisphere 32.3
Hippocampus, CA1
nTPM: 34.6
2749 Male, age 80, left hemisphere 45.3
1873 Female, age 85, both hemispheres 36.1
2082 Female, age 91, right hemisphere 30.8
2045 Male, age 76, both hemispheres 30.4
2527 Male, age 74, both hemispheres 30.3
Hippocampus, CA2
nTPM: 35.3
1892 Male, age 76, both hemispheres 41.0
1963 Male, age 80, left hemisphere 40.8
2437 Female, age 94, left hemisphere 34.7
1940 Female, age 85, left hemisphere 32.0
2113 Female, age 91, right hemisphere 31.7
2249 Male, age 74, both hemispheres 31.4
Hippocampus, CA3
nTPM: 33.3
1867 Male, age 76, both hemispheres 36.5
2861 Female, age 67, both hemispheres 34.9
2137 Male, age 80, left hemisphere 34.4
2436 Male, age 74, both hemispheres 32.5
1891 Female, age 85, both hemispheres 31.3
2620 Female, age 94, left hemisphere 30.3
Parahippocampal cortex
nTPM: 33.4
1850 Male, age 80, both hemispheres 39.4
2692 Male, age 74, both hemispheres 36.5
1933 Female, age 85, both hemispheres 36.0
2622 Female, age 67, right hemisphere 34.7
2532 Female, age 72, left hemisphere 34.5
2018 Male, age 76, both hemispheres 32.9
2245 Female, age 91, both hemispheres 31.2
2693 Female, age 94, both hemispheres 31.1
1990 Female, age 91, right hemisphere 29.9
2250 Female, age 67, right hemisphere 27.5
Perirhinal gyrus
nTPM: 34.8
1847 Female, age 91, left hemisphere 38.4
1794 Male, age 80, right hemisphere 36.9
1841 Female, age 85, right hemisphere 34.0
2521 Female, age 94, right hemisphere 32.5
2848 Male, age 76, right hemisphere 32.1
Subiculum
nTPM: 33.2
2619 Male, age 74, both hemispheres 34.9
2042 Male, age 76, both hemispheres 33.9
2438 Female, age 94, left hemisphere 33.0
1901 Male, age 80, both hemispheres 32.9
1977 Female, age 85, both hemispheres 32.5
2729 Female, age 91, right hemisphere 31.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 35.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 35.6
Samples: 197

Max nTPM: 58.6
Min nTPM: 18.0
Std nTPM: 6.9
Median nTPM: 35.1
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 58.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 53.6
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 52.3
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 51.9
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 51.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 51.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 49.6
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 48.9
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 48.7
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 48.1
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 48.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 33.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 33.2
FF:10169-103B7 60 years, female 37.3
FF:10153-102I9 76 years, female 29.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 12.6
Pig sample Sample description nTPM
Subiculum
nTPM: 11.6
Samples: 4

Max nTPM: 12.9
Min nTPM: 10.7
Sample A Female 12.9
Sample B Female 10.7
Sample C Male 11.7
Sample D Male 11.0
Dorsal hippocampus
nTPM: 12.4
Samples: 4

Max nTPM: 14.8
Min nTPM: 10.3
Sample A Female 14.8
Sample B Female 12.5
Sample C Male 11.9
Sample D Male 10.3
Entorhinal cortex
nTPM: 11.3
Samples: 4

Max nTPM: 12.3
Min nTPM: 10.2
Sample A Female 11.3
Sample B Female 11.5
Sample C Male 12.3
Sample D Male 10.2
Ventral hippocampus
nTPM: 12.6
Samples: 4

Max nTPM: 15.9
Min nTPM: 9.9
Sample A Female 13.3
Sample B Female 9.9
Sample C Male 15.9
Sample D Male 11.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 48.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.8
Samples: 4

Max nTPM: 47.0
Min nTPM: 44.7
Sample A Male 45.1
Sample B Male 46.3
Sample C Female 47.0
Sample D Female 44.7
Hippocampal formation
nTPM: 48.3
Samples: 4

Max nTPM: 61.8
Min nTPM: 42.7
Sample A Male 61.8
Sample B Male 42.7
Sample C Female 43.6
Sample D Female 45.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
68633377 Antisense, RP_050125_02_G04, Mouse strain C57BL/6J (56 days, male) 1.6

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