MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:15.7 nTPM
GTEx:12.5 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:101.0 nTPM
Allen mouse:7.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 15.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
2666 Male, age 74, left hemisphere 18.1
2586 Male, age 75, left hemisphere 17.5
2019 Male, age 18, unknown 17.2
1827 Male, age 72, unknown 16.5
1870 Female, age 42, unknown 15.0
2411 Female, age 72, unknown 14.4
2828 Female, age 72, unknown 14.1
2219 Male, age 76, both hemispheres 13.1
1830 Male, age 51, unknown 12.3
1833 Male, age 53, unknown 11.7
Dorsal raphe nucleus
nTPM: 13.4
2047 Male, age 72, unknown 15.3
2298 Female, age 72, unknown 14.1
2750 Male, age 76, both hemispheres 13.4
1828 Male, age 53, unknown 12.9
2016 Female, age 72, unknown 11.5
Inferior colliculus
nTPM: 13.7
2097 Female, age 72, unknown 15.7
1848 Female, age 42, unknown 14.8
2849 Male, age 72, unknown 13.0
1890 Male, age 53, unknown 11.2
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 14.2
1795 Male, age 51, unknown 17.2
1947 Male, age 18, unknown 15.1
2502 Female, age 75, unknown 10.2
Periaquaductal grey, dorsal
nTPM: 11.8
1840 Male, age 53, unknown 14.8
1831 Male, age 72, unknown 12.9
2464 Female, age 72, unknown 12.0
2850 Male, age 76, both hemispheres 7.4
Periaquaductal grey, lateral
nTPM: 10.4
2053 Male, age 18, unknown 11.0
2272 Male, age 74, both hemispheres 10.2
2140 Male, age 76, both hemispheres 10.0
Pretectal area
nTPM: 15.7
2007 Male, age 72, unknown 22.7
1817 Female, age 42, unknown 20.0
1816 Male, age 51, unknown 19.3
1944 Female, age 72, unknown 17.9
1815 Male, age 53, unknown 17.8
2407 Male, age 75, both hemispheres 14.9
2224 Female, age 72, unknown 12.6
2825 Male, age 18, unknown 12.5
2273 Male, age 74, both hemispheres 12.3
2316 Male, age 76, right hemisphere 12.2
2667 Female, age 75, unknown 10.9
Red nucleus
nTPM: 13.3
2584 Male, age 75, left hemisphere 19.3
2588 Male, age 74, left hemisphere 18.7
2725 Female, age 75, unknown 16.0
2785 Male, age 18, unknown 14.7
2769 Male, age 72, unknown 12.5
1865 Male, age 51, unknown 11.9
2227 Male, age 72, unknown 11.8
1904 Male, age 53, unknown 11.7
1821 Female, age 72, unknown 11.3
2823 Male, age 76, right hemisphere 11.3
2503 Female, age 72, unknown 10.7
1954 Female, age 42, unknown 9.2
Substantia nigra
nTPM: 12.9
2583 Male, age 75, right hemisphere 20.8
2665 Male, age 74, both hemispheres 16.3
1889 Female, age 72, unknown 15.9
1941 Male, age 53, unknown 14.7
2590 Female, age 75, unknown 14.5
1851 Male, age 51, unknown 14.0
1916 Female, age 42, unknown 12.0
2241 Male, age 72, unknown 8.7
2699 Male, age 18, unknown 7.1
2409 Female, age 72, unknown 5.2
Superior colliculus
nTPM: 14.4
2261 Male, age 18, unknown 19.0
2668 Female, age 75, unknown 18.2
1796 Male, age 53, unknown 15.6
2664 Male, age 75, both hemispheres 15.6
2087 Female, age 72, unknown 14.1
1913 Female, age 42, unknown 13.9
2587 Male, age 74, left hemisphere 13.9
1895 Male, age 76, right hemisphere 11.7
1839 Male, age 51, unknown 11.5
1995 Male, age 72, unknown 10.8
Ventral tegmental area
nTPM: 11.8
2223 Female, age 72, unknown 15.4
2410 Female, age 72, unknown 14.8
1942 Male, age 51, unknown 10.3
2021 Male, age 53, unknown 10.2
2218 Male, age 76, both hemispheres 10.2
1915 Female, age 42, unknown 9.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 27.8
Min nTPM: 5.7
Std nTPM: 3.1
Median nTPM: 12.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 25.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 20.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 20.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 18.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 17.1
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 16.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 16.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.2
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.8
FF:10158-103A5 76 years, female 15.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.6
Samples: 4

Max nTPM: 43.3
Min nTPM: 32.9
Sample A Female 43.3
Sample B Female 32.9
Sample C Male 40.1
Sample D Male 38.2
Midbrain
nTPM: 41.1
Samples: 4

Max nTPM: 46.8
Min nTPM: 35.7
Sample A Female 45.4
Sample B Female 35.7
Sample C Male 46.8
Sample D Male 36.3
Periaqueductal gray
nTPM: 34.2
Samples: 3

Max nTPM: 35.5
Min nTPM: 33.3
Sample B Female 33.3
Sample C Male 35.5
Sample D Male 33.7
Superior colliculi
nTPM: 36.7
Samples: 4

Max nTPM: 45.0
Min nTPM: 26.8
Sample A Female 35.1
Sample B Female 26.8
Sample C Male 45.0
Sample D Male 39.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.1
Samples: 4

Max nTPM: 103.5
Min nTPM: 98.4
Sample A Male 101.0
Sample B Male 103.5
Sample C Female 98.4
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.1
71608209 Antisense, RP_050927_01_B05, Mouse strain C57BL/6J (56 days, male) 9.3
75773512 Antisense, RP_060530_01_A02, Mouse strain C57BL/6J (56 days, male) 6.3
71833000 Antisense, RP_051005_04_A09, Mouse strain C57BL/6J (56 days, male) 5.8

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org