MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:5.7 nTPM
HPA Brain:14.4 nTPM
GTEx:5.7 nTPM
FANTOM5:21.8 Scaled Tags Per Million
Pig:15.8 nTPM
Mouse:17.1 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 14.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.0
2586 Male, age 75, left hemisphere 13.7
2666 Male, age 74, left hemisphere 13.6
2019 Male, age 18, unknown 13.4
2219 Male, age 76, both hemispheres 13.3
1827 Male, age 72, unknown 13.2
1830 Male, age 51, unknown 12.7
2828 Female, age 72, unknown 12.7
1870 Female, age 42, unknown 12.6
1833 Male, age 53, unknown 12.4
2411 Female, age 72, unknown 12.4
Dorsal raphe nucleus
nTPM: 12.1
2047 Male, age 72, unknown 12.9
2298 Female, age 72, unknown 12.1
1828 Male, age 53, unknown 12.0
2750 Male, age 76, both hemispheres 12.0
2016 Female, age 72, unknown 11.5
Inferior colliculus
nTPM: 12.9
1890 Male, age 53, unknown 13.3
2849 Male, age 72, unknown 13.2
2097 Female, age 72, unknown 12.7
1848 Female, age 42, unknown 12.5
Median raphe nucleus
nTPM: 14.4
2220 Male, age 76, midline 14.4
Periaquaductal grey, anterior
nTPM: 12.9
1947 Male, age 18, unknown 13.8
2502 Female, age 75, unknown 13.2
1795 Male, age 51, unknown 11.5
Periaquaductal grey, dorsal
nTPM: 12.2
2850 Male, age 76, both hemispheres 13.6
1840 Male, age 53, unknown 12.2
2464 Female, age 72, unknown 11.5
1831 Male, age 72, unknown 11.4
Periaquaductal grey, lateral
nTPM: 12.5
2140 Male, age 76, both hemispheres 13.9
2053 Male, age 18, unknown 12.4
2272 Male, age 74, both hemispheres 11.2
Pretectal area
nTPM: 12.6
2007 Male, age 72, unknown 13.8
1816 Male, age 51, unknown 13.6
1817 Female, age 42, unknown 13.6
1815 Male, age 53, unknown 13.3
2316 Male, age 76, right hemisphere 12.9
2407 Male, age 75, both hemispheres 12.3
1944 Female, age 72, unknown 12.2
2667 Female, age 75, unknown 12.2
2825 Male, age 18, unknown 12.1
2224 Female, age 72, unknown 11.7
2273 Male, age 74, both hemispheres 10.5
Red nucleus
nTPM: 13.0
1821 Female, age 72, unknown 14.1
2588 Male, age 74, left hemisphere 13.8
2725 Female, age 75, unknown 13.6
1865 Male, age 51, unknown 13.5
2584 Male, age 75, left hemisphere 13.3
2823 Male, age 76, right hemisphere 13.1
1904 Male, age 53, unknown 12.8
2503 Female, age 72, unknown 12.6
1954 Female, age 42, unknown 12.5
2785 Male, age 18, unknown 12.5
2227 Male, age 72, unknown 12.4
2769 Male, age 72, unknown 11.9
Substantia nigra
nTPM: 13.4
2409 Female, age 72, unknown 15.8
2241 Male, age 72, unknown 14.0
1916 Female, age 42, unknown 13.6
1941 Male, age 53, unknown 13.5
2665 Male, age 74, both hemispheres 13.5
2590 Female, age 75, unknown 12.9
1851 Male, age 51, unknown 12.7
1889 Female, age 72, unknown 12.7
2583 Male, age 75, right hemisphere 12.5
2699 Male, age 18, unknown 12.3
Superior colliculus
nTPM: 12.5
1839 Male, age 51, unknown 13.4
2261 Male, age 18, unknown 13.2
1895 Male, age 76, right hemisphere 13.1
1913 Female, age 42, unknown 12.6
2587 Male, age 74, left hemisphere 12.6
2087 Female, age 72, unknown 12.5
1796 Male, age 53, unknown 12.4
2668 Female, age 75, unknown 12.2
1995 Male, age 72, unknown 11.9
2664 Male, age 75, both hemispheres 10.8
Ventral tegmental area
nTPM: 12.5
2410 Female, age 72, unknown 13.2
2218 Male, age 76, both hemispheres 12.9
1915 Female, age 42, unknown 12.7
1942 Male, age 51, unknown 12.2
2021 Male, age 53, unknown 12.1
2223 Female, age 72, unknown 12.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 5.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 5.7
Samples: 139

Max nTPM: 9.1
Min nTPM: 3.5
Std nTPM: 0.9
Median nTPM: 5.5
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 9.1
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 8.9
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 8.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 8.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 7.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.4
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 7.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 7.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 7.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 7.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 21.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.8
FF:10158-103A5 76 years, female 21.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 15.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 15.5
Samples: 4

Max nTPM: 16.1
Min nTPM: 15.0
Sample A Female 15.0
Sample B Female 15.2
Sample C Male 15.7
Sample D Male 16.1
Midbrain
nTPM: 15.8
Samples: 4

Max nTPM: 16.4
Min nTPM: 14.4
Sample A Female 16.4
Sample B Female 14.4
Sample C Male 16.4
Sample D Male 15.9
Periaqueductal gray
nTPM: 14.3
Samples: 3

Max nTPM: 14.9
Min nTPM: 14.0
Sample B Female 14.0
Sample C Male 14.9
Sample D Male 14.1
Superior colliculi
nTPM: 15.5
Samples: 4

Max nTPM: 16.0
Min nTPM: 14.8
Sample A Female 14.8
Sample B Female 15.7
Sample C Male 16.0
Sample D Male 15.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.1
Samples: 4

Max nTPM: 18.5
Min nTPM: 15.9
Sample A Male 17.1
Sample B Male 15.9
Sample C Female 16.9
Sample D Female 18.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
69527986 Antisense, RP_050421_02_H04, Mouse strain C57BL/6J (56 days, male) 2.4

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