MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.8 nTPM
HPA Brain:19.2 nTPM
GTEx:24.8 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:60.8 nTPM
Mouse:61.0 nTPM
Allen mouse:2.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.6
2019 Male, age 18, unknown 20.6
1870 Female, age 42, unknown 17.3
2411 Female, age 72, unknown 17.1
2666 Male, age 74, left hemisphere 16.9
1827 Male, age 72, unknown 16.3
1830 Male, age 51, unknown 14.3
1833 Male, age 53, unknown 14.3
2828 Female, age 72, unknown 13.3
2219 Male, age 76, both hemispheres 13.2
2586 Male, age 75, left hemisphere 12.5
Dorsal raphe nucleus
nTPM: 17.7
2298 Female, age 72, unknown 21.0
1828 Male, age 53, unknown 19.4
2047 Male, age 72, unknown 18.5
2016 Female, age 72, unknown 15.2
2750 Male, age 76, both hemispheres 14.2
Inferior colliculus
nTPM: 14.9
1890 Male, age 53, unknown 16.5
2097 Female, age 72, unknown 15.4
1848 Female, age 42, unknown 14.3
2849 Male, age 72, unknown 13.5
Median raphe nucleus
nTPM: 18.7
2220 Male, age 76, midline 18.7
Periaquaductal grey, anterior
nTPM: 17.9
1947 Male, age 18, unknown 20.9
1795 Male, age 51, unknown 16.4
2502 Female, age 75, unknown 16.3
Periaquaductal grey, dorsal
nTPM: 19.2
2850 Male, age 76, both hemispheres 35.6
1831 Male, age 72, unknown 14.7
1840 Male, age 53, unknown 14.2
2464 Female, age 72, unknown 12.2
Periaquaductal grey, lateral
nTPM: 17.3
2140 Male, age 76, both hemispheres 22.1
2272 Male, age 74, both hemispheres 16.3
2053 Male, age 18, unknown 13.6
Pretectal area
nTPM: 18.8
1817 Female, age 42, unknown 22.6
2007 Male, age 72, unknown 22.6
1815 Male, age 53, unknown 22.4
1816 Male, age 51, unknown 21.2
2224 Female, age 72, unknown 18.9
1944 Female, age 72, unknown 18.5
2273 Male, age 74, both hemispheres 18.3
2407 Male, age 75, both hemispheres 17.3
2667 Female, age 75, unknown 16.4
2316 Male, age 76, right hemisphere 15.7
2825 Male, age 18, unknown 12.8
Red nucleus
nTPM: 16.4
2725 Female, age 75, unknown 25.7
1821 Female, age 72, unknown 19.8
2503 Female, age 72, unknown 18.7
2785 Male, age 18, unknown 18.6
1865 Male, age 51, unknown 16.1
1954 Female, age 42, unknown 15.9
1904 Male, age 53, unknown 15.6
2227 Male, age 72, unknown 14.2
2769 Male, age 72, unknown 14.0
2823 Male, age 76, right hemisphere 14.0
2584 Male, age 75, left hemisphere 13.0
2588 Male, age 74, left hemisphere 10.7
Substantia nigra
nTPM: 18.2
1916 Female, age 42, unknown 25.5
2241 Male, age 72, unknown 22.9
1889 Female, age 72, unknown 22.0
1851 Male, age 51, unknown 21.9
2665 Male, age 74, both hemispheres 19.3
2699 Male, age 18, unknown 15.9
2409 Female, age 72, unknown 15.1
1941 Male, age 53, unknown 15.0
2590 Female, age 75, unknown 13.9
2583 Male, age 75, right hemisphere 11.0
Superior colliculus
nTPM: 14.4
2587 Male, age 74, left hemisphere 17.7
1796 Male, age 53, unknown 17.5
2261 Male, age 18, unknown 15.7
1895 Male, age 76, right hemisphere 14.3
2668 Female, age 75, unknown 13.9
1913 Female, age 42, unknown 13.6
1995 Male, age 72, unknown 13.4
2087 Female, age 72, unknown 13.4
1839 Male, age 51, unknown 12.8
2664 Male, age 75, both hemispheres 11.7
Ventral tegmental area
nTPM: 16.6
1915 Female, age 42, unknown 20.4
2410 Female, age 72, unknown 18.0
2218 Male, age 76, both hemispheres 17.3
1942 Male, age 51, unknown 15.0
2021 Male, age 53, unknown 14.5
2223 Female, age 72, unknown 14.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 24.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.8
Samples: 139

Max nTPM: 120.3
Min nTPM: 8.0
Std nTPM: 17.5
Median nTPM: 19.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 120.3
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 92.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 85.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 81.3
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 78.1
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 77.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 72.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 70.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 62.0
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 54.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 50.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 51.5
Samples: 4

Max nTPM: 64.8
Min nTPM: 41.3
Sample A Female 64.8
Sample B Female 44.3
Sample C Male 55.4
Sample D Male 41.3
Midbrain
nTPM: 57.7
Samples: 4

Max nTPM: 62.3
Min nTPM: 53.4
Sample A Female 62.3
Sample B Female 54.8
Sample C Male 53.4
Sample D Male 60.4
Periaqueductal gray
nTPM: 53.3
Samples: 3

Max nTPM: 57.3
Min nTPM: 49.2
Sample B Female 49.2
Sample C Male 53.4
Sample D Male 57.3
Superior colliculi
nTPM: 60.8
Samples: 4

Max nTPM: 70.5
Min nTPM: 56.4
Sample A Female 70.5
Sample B Female 57.5
Sample C Male 58.7
Sample D Male 56.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.0
Samples: 4

Max nTPM: 67.3
Min nTPM: 53.4
Sample A Male 53.4
Sample B Male 56.5
Sample C Female 67.3
Sample D Female 66.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.7
69114211 Antisense, RP_050317_01_C08, Mouse strain C57BL/6J (56 days, male) 2.7

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