MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.0 nTPM
HPA Brain:25.9 nTPM
GTEx:3.0 nTPM
FANTOM5:6.9 Scaled Tags Per Million
Pig:14.2 nTPM
Mouse:6.8 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 25.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 12.6
2411 Female, age 72, unknown 23.1
1833 Male, age 53, unknown 16.7
1870 Female, age 42, unknown 15.0
2219 Male, age 76, both hemispheres 14.3
2586 Male, age 75, left hemisphere 12.3
1830 Male, age 51, unknown 12.2
2019 Male, age 18, unknown 8.9
2666 Male, age 74, left hemisphere 8.6
1827 Male, age 72, unknown 7.9
2828 Female, age 72, unknown 6.9
Dorsal raphe nucleus
nTPM: 25.7
1828 Male, age 53, unknown 40.9
2047 Male, age 72, unknown 25.6
2016 Female, age 72, unknown 24.6
2298 Female, age 72, unknown 22.3
2750 Male, age 76, both hemispheres 15.0
Inferior colliculus
nTPM: 19.9
2849 Male, age 72, unknown 31.5
1848 Female, age 42, unknown 21.1
1890 Male, age 53, unknown 15.6
2097 Female, age 72, unknown 11.4
Median raphe nucleus
nTPM: 19.5
2220 Male, age 76, midline 19.5
Periaquaductal grey, anterior
nTPM: 9.7
2502 Female, age 75, unknown 19.4
1795 Male, age 51, unknown 6.2
1947 Male, age 18, unknown 3.5
Periaquaductal grey, dorsal
nTPM: 25.9
1831 Male, age 72, unknown 34.7
1840 Male, age 53, unknown 31.9
2850 Male, age 76, both hemispheres 19.2
2464 Female, age 72, unknown 17.7
Periaquaductal grey, lateral
nTPM: 25.3
2272 Male, age 74, both hemispheres 34.8
2053 Male, age 18, unknown 20.7
2140 Male, age 76, both hemispheres 20.6
Pretectal area
nTPM: 17.4
2273 Male, age 74, both hemispheres 39.6
2224 Female, age 72, unknown 23.6
2825 Male, age 18, unknown 21.3
2407 Male, age 75, both hemispheres 18.6
1816 Male, age 51, unknown 17.4
2316 Male, age 76, right hemisphere 17.4
1944 Female, age 72, unknown 16.0
1817 Female, age 42, unknown 11.0
2007 Male, age 72, unknown 9.4
1815 Male, age 53, unknown 9.1
2667 Female, age 75, unknown 7.7
Red nucleus
nTPM: 13.3
1821 Female, age 72, unknown 15.9
2584 Male, age 75, left hemisphere 15.6
2725 Female, age 75, unknown 15.6
2227 Male, age 72, unknown 14.7
2769 Male, age 72, unknown 14.1
2503 Female, age 72, unknown 14.0
1954 Female, age 42, unknown 13.0
1904 Male, age 53, unknown 12.3
2588 Male, age 74, left hemisphere 12.1
2785 Male, age 18, unknown 10.9
1865 Male, age 51, unknown 10.6
2823 Male, age 76, right hemisphere 10.3
Substantia nigra
nTPM: 15.2
2699 Male, age 18, unknown 25.5
2241 Male, age 72, unknown 22.4
2665 Male, age 74, both hemispheres 15.7
2409 Female, age 72, unknown 14.6
1851 Male, age 51, unknown 14.2
1916 Female, age 42, unknown 13.4
2590 Female, age 75, unknown 13.2
1889 Female, age 72, unknown 11.5
1941 Male, age 53, unknown 11.3
2583 Male, age 75, right hemisphere 10.4
Superior colliculus
nTPM: 16.4
2587 Male, age 74, left hemisphere 25.8
2261 Male, age 18, unknown 23.8
1895 Male, age 76, right hemisphere 22.3
1839 Male, age 51, unknown 18.9
2664 Male, age 75, both hemispheres 18.9
2087 Female, age 72, unknown 15.5
1796 Male, age 53, unknown 12.0
2668 Female, age 75, unknown 11.4
1995 Male, age 72, unknown 7.8
1913 Female, age 42, unknown 7.6
Ventral tegmental area
nTPM: 22.7
2218 Male, age 76, both hemispheres 32.9
2021 Male, age 53, unknown 24.9
1942 Male, age 51, unknown 24.2
1915 Female, age 42, unknown 23.0
2223 Female, age 72, unknown 16.6
2410 Female, age 72, unknown 14.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.0
Samples: 139

Max nTPM: 12.6
Min nTPM: 0.4
Std nTPM: 1.8
Median nTPM: 2.7
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 12.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 8.9
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 7.6
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 7.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 7.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 6.8
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 6.7
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 6.5
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 6.3
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 6.2
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 6.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.9
FF:10158-103A5 76 years, female 6.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 14.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 11.1
Samples: 4

Max nTPM: 15.6
Min nTPM: 4.9
Sample A Female 15.0
Sample B Female 15.6
Sample C Male 9.0
Sample D Male 4.9
Midbrain
nTPM: 6.6
Samples: 4

Max nTPM: 10.3
Min nTPM: 4.8
Sample A Female 5.6
Sample B Female 10.3
Sample C Male 5.8
Sample D Male 4.8
Periaqueductal gray
nTPM: 14.2
Samples: 3

Max nTPM: 16.7
Min nTPM: 10.9
Sample B Female 10.9
Sample C Male 14.9
Sample D Male 16.7
Superior colliculi
nTPM: 10.4
Samples: 4

Max nTPM: 19.9
Min nTPM: 2.9
Sample A Female 10.3
Sample B Female 19.9
Sample C Male 2.9
Sample D Male 8.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.3
Sample A Male 5.3
Sample B Male 6.9
Sample C Female 7.7
Sample D Female 7.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
79591683 Antisense, RP_071204_04_G12, Mouse strain C57BL/6J (56 days, male) 0.9
981 Antisense, RP_Baylor_103039, Mouse strain C57BL/6J (56 days, male) 0.8
980 Antisense, RP_Baylor_103039, Mouse strain C57BL/6J (56 days, male) 0.5
79913554 Antisense, RP_071204_04_G12, Mouse strain C57BL/6J (56 days, male) 0.5

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