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                                  • CCNA2
                                  BRAIN RETINA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
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                                  Brain proteome
                                  Eye
                                  Retina
                                  RETINA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  Consensus:30.8 nTPM
                                  GTEx:30.8 nTPM
                                  FANTOM5:0.4 Scaled Tags Per Million
                                  Pig:9.0 nTPM
                                  Mouse:3.2 nTPM

                                  RETINA - GTEx RNA-seqi

                                  RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                  Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 30.8
                                  GTEx sample id Sample description nTPM
                                  22.027.237.99.359.701020304050607080
                                  22.027.237.99.359.701020304050607080
                                  Retina
                                  Average nTPM: 30.8
                                  Samples: 105

                                  Max nTPM: 81.5
                                  Min nTPM: 9.3
                                  Std nTPM: 13.1
                                  Median nTPM:
                                  119_1 70 years, female 81.5
                                  99_1 64 years, male 79.4
                                  142_1 61 years, female 59.7
                                  42_1 85 years, male 59.3
                                  491_1 89 years, female 58.5
                                  89_1 63 years, male 54.5
                                  447_1 81 years, male 50.7
                                  375_1 74 years, female 49.3
                                  162_1 79 years, female 49.0
                                  41_1 94 years, female 48.8
                                  35_1 74 years, female 47.2
                                  313_1 79 years, female 46.8
                                  490_1 67 years, female 46.7
                                  415_1 77 years, female 46.4
                                  317_1 60 years, male 46.3
                                  120_1 70 years, female 46.1
                                  117_1 61 years, male 46.0
                                  109_1 81 years, female 45.9
                                  347_1 72 years, male 44.3
                                  379_1 60 years, male 43.2
                                  311_1 78 years, male 41.3
                                  315_1 62 years, female 41.2
                                  307_1 66 years, female 39.7
                                  145_1 84 years, male 39.4
                                  6_1 73 years, female 39.0
                                  266_1 85 years, male 38.3
                                  149_1 88 years, male 37.9
                                  115_1 83 years, male 36.8
                                  32_1 67 years, male 36.3
                                  139_1 64 years, female 36.1
                                  396_1 62 years, male 36.0
                                  354_1 81 years, female 35.2
                                  173_1 67 years, male 35.0
                                  237_1 82 years, male 33.7
                                  499_1 55 years, female 32.3
                                  9_1 66 years, female 31.6
                                  355_1 70 years, female 31.6
                                  43_1 64 years, female 31.3
                                  81_1 67 years, male 31.2
                                  137_1 83 years, male 30.6
                                  126_1 63 years, male 30.2
                                  153_1 70 years, female 29.6
                                  17_1 71 years, male 29.3
                                  466_1 57 years, female 29.2
                                  4_1 88 years, female 28.7
                                  286_1 68 years, female 28.7
                                  324_1 76 years, male 28.7
                                  2_1 77 years, female 28.3
                                  264_1 73 years, female 27.5
                                  314_1 67 years, male 27.4
                                  356_1 87 years, female 27.4
                                  288_1 66 years, female 27.3
                                  386_1 76 years, male 27.2
                                  229_1 69 years, female 26.9
                                  495_1 57 years, female 26.9
                                  217_1 76 years, male 26.7
                                  350_1 84 years, female 26.6
                                  414_1 84 years, female 26.6
                                  18_1 88 years, male 26.4
                                  308_1 70 years, female 26.4
                                  394_1 75 years, female 25.9
                                  389_1 86 years, female 25.6
                                  218_1 71 years, female 25.4
                                  452_1 88 years, female 25.3
                                  265_1 87 years, male 25.0
                                  413_1 59 years, female 24.8
                                  318_1 68 years, male 24.7
                                  348_1 84 years, male 24.5
                                  384_1 83 years, male 24.4
                                  506_1 65 years, male 24.2
                                  172_1 72 years, female 24.0
                                  322_1 76 years, male 23.8
                                  243_1 75 years, male 23.6
                                  353_1 82 years, female 23.2
                                  316_1 62 years, male 22.6
                                  291_1 76 years, male 22.5
                                  468_1 89 years, male 22.3
                                  352_1 62 years, male 22.2
                                  351_1 91 years, male 22.0
                                  349_1 83 years, male 21.8
                                  501_1 88 years, male 21.8
                                  246_1 77 years, male 20.5
                                  503_1 68 years, male 20.5
                                  295_1 61 years, female 20.3
                                  335_1 73 years, female 20.3
                                  320_1 89 years, female 20.2
                                  254_1 77 years, female 19.5
                                  405_1 91 years, male 19.1
                                  526_1 61 years, male 18.5
                                  292_1 71 years, male 18.1
                                  319_1 81 years, male 17.2
                                  321_1 62 years, female 17.2
                                  189_1 76 years, male 17.0
                                  377_1 82 years, female 16.9
                                  404_1 82 years, female 16.9
                                  376_1 75 years, female 16.6
                                  425_1 59 years, female 16.5
                                  480_1 63 years, male 16.3
                                  517_1 88 years, male 16.3
                                  177_1 74 years, male 16.1
                                  518_1 75 years, female 15.2
                                  251_1 78 years, male 14.5
                                  406_1 79 years, male 14.5
                                  293_1 68 years, female 14.2
                                  163_1 78 years, male 9.3
                                  Show allShow less

                                  RETINA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 0.4
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Retina
                                  Scaled Tags Per Million: 0.4
                                  FF:10030-101E3 24-65 years, mixed 0.4

                                  RETINA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 9.0
                                  Pig sample Sample description nTPM
                                  8.18.59.48.011.101234567891011
                                  8.18.59.48.011.101234567891011
                                  Retina
                                  nTPM: 9.0
                                  Samples: 4

                                  Max nTPM: 11.1
                                  Min nTPM: 8.0
                                  Sample A Female 8.8
                                  Sample B Female 8.0
                                  Sample C Male 8.2
                                  Sample D Male 11.1

                                  RETINA - Mouse RNA-seqi

                                  RNA-seq data obtained from mouse brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 3.2
                                  Mouse sample Sample description nTPM
                                  2.12.73.81.36.10.00.51.01.52.02.53.03.54.04.55.05.56.0
                                  2.12.73.81.36.10.00.51.01.52.02.53.03.54.04.55.05.56.0
                                  Retina
                                  nTPM: 3.2
                                  Samples: 4

                                  Max nTPM: 6.1
                                  Min nTPM: 1.3
                                  Sample A Male 1.3
                                  Sample B Male 6.1
                                  Sample C Female 2.4
                                  Sample D Female 3.0

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