MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.7 nTPM
HPA Brain:150.1 nTPM
GTEx:21.7 nTPM
FANTOM5:225.8 Scaled Tags Per Million
Pig:103.4 nTPM
Mouse:34.5 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 150.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.5
1830 Male, age 51, unknown 131.1
1833 Male, age 53, unknown 129.9
2586 Male, age 75, left hemisphere 120.1
2828 Female, age 72, unknown 118.7
2019 Male, age 18, unknown 117.2
1870 Female, age 42, unknown 117.0
2411 Female, age 72, unknown 116.9
2666 Male, age 74, left hemisphere 110.9
1827 Male, age 72, unknown 108.6
2219 Male, age 76, both hemispheres 104.9
Dorsal raphe nucleus
nTPM: 104.2
2016 Female, age 72, unknown 124.3
1828 Male, age 53, unknown 110.4
2047 Male, age 72, unknown 100.0
2750 Male, age 76, both hemispheres 99.7
2298 Female, age 72, unknown 86.5
Inferior colliculus
nTPM: 116.8
2849 Male, age 72, unknown 131.6
1848 Female, age 42, unknown 128.7
1890 Male, age 53, unknown 106.5
2097 Female, age 72, unknown 100.4
Median raphe nucleus
nTPM: 89.4
2220 Male, age 76, midline 89.4
Periaquaductal grey, anterior
nTPM: 139.8
1947 Male, age 18, unknown 181.3
2502 Female, age 75, unknown 120.5
1795 Male, age 51, unknown 117.5
Periaquaductal grey, dorsal
nTPM: 96.5
2464 Female, age 72, unknown 110.7
1831 Male, age 72, unknown 94.4
1840 Male, age 53, unknown 92.2
2850 Male, age 76, both hemispheres 89.0
Periaquaductal grey, lateral
nTPM: 99.8
2053 Male, age 18, unknown 105.2
2272 Male, age 74, both hemispheres 103.8
2140 Male, age 76, both hemispheres 90.4
Pretectal area
nTPM: 108.1
1817 Female, age 42, unknown 130.4
2407 Male, age 75, both hemispheres 123.6
2007 Male, age 72, unknown 117.9
1815 Male, age 53, unknown 115.1
2825 Male, age 18, unknown 109.6
2316 Male, age 76, right hemisphere 106.2
2667 Female, age 75, unknown 105.0
2273 Male, age 74, both hemispheres 104.0
2224 Female, age 72, unknown 101.4
1944 Female, age 72, unknown 88.5
1816 Male, age 51, unknown 86.9
Red nucleus
nTPM: 150.1
1954 Female, age 42, unknown 178.0
1865 Male, age 51, unknown 174.0
1821 Female, age 72, unknown 167.9
2503 Female, age 72, unknown 156.8
1904 Male, age 53, unknown 156.5
2588 Male, age 74, left hemisphere 154.4
2769 Male, age 72, unknown 148.4
2227 Male, age 72, unknown 147.9
2725 Female, age 75, unknown 145.1
2823 Male, age 76, right hemisphere 128.6
2584 Male, age 75, left hemisphere 125.7
2785 Male, age 18, unknown 117.6
Substantia nigra
nTPM: 113.0
2583 Male, age 75, right hemisphere 128.9
2699 Male, age 18, unknown 127.3
2665 Male, age 74, both hemispheres 123.8
2590 Female, age 75, unknown 115.7
1889 Female, age 72, unknown 114.4
1851 Male, age 51, unknown 111.9
2241 Male, age 72, unknown 106.0
1941 Male, age 53, unknown 103.3
2409 Female, age 72, unknown 102.5
1916 Female, age 42, unknown 95.8
Superior colliculus
nTPM: 114.7
2664 Male, age 75, both hemispheres 136.6
2668 Female, age 75, unknown 131.7
1839 Male, age 51, unknown 127.8
2587 Male, age 74, left hemisphere 122.2
1895 Male, age 76, right hemisphere 115.3
1913 Female, age 42, unknown 113.1
1995 Male, age 72, unknown 111.5
1796 Male, age 53, unknown 109.4
2087 Female, age 72, unknown 90.6
2261 Male, age 18, unknown 89.0
Ventral tegmental area
nTPM: 104.4
2410 Female, age 72, unknown 125.9
2223 Female, age 72, unknown 115.4
1915 Female, age 42, unknown 102.4
1942 Male, age 51, unknown 101.8
2021 Male, age 53, unknown 100.0
2218 Male, age 76, both hemispheres 81.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.7
Samples: 139

Max nTPM: 40.3
Min nTPM: 9.3
Std nTPM: 5.9
Median nTPM: 21.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 40.3
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 37.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 34.3
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 33.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 33.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 33.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 32.3
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.3
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 31.3
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 31.2
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 30.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 225.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 225.8
FF:10158-103A5 76 years, female 225.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 103.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 92.8
Samples: 4

Max nTPM: 96.8
Min nTPM: 84.4
Sample A Female 96.8
Sample B Female 84.4
Sample C Male 93.1
Sample D Male 96.8
Midbrain
nTPM: 103.4
Samples: 4

Max nTPM: 162.9
Min nTPM: 66.8
Sample A Female 162.9
Sample B Female 96.8
Sample C Male 87.1
Sample D Male 66.8
Periaqueductal gray
nTPM: 95.3
Samples: 3

Max nTPM: 102.0
Min nTPM: 87.0
Sample B Female 102.0
Sample C Male 96.9
Sample D Male 87.0
Superior colliculi
nTPM: 83.7
Samples: 4

Max nTPM: 96.0
Min nTPM: 66.2
Sample A Female 85.7
Sample B Female 66.2
Sample C Male 96.0
Sample D Male 87.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.5
Samples: 4

Max nTPM: 38.3
Min nTPM: 31.1
Sample A Male 31.1
Sample B Male 38.3
Sample C Female 34.7
Sample D Female 34.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
68546560 Antisense, RP_050120_02_F12, Mouse strain C57BL/6J (56 days, male) 3.4
70812859 Antisense, RP_050712_02_G05, Mouse strain C57BL/6J (56 days, male) 0.6
74359574 Antisense, RP_051219_04_H06, Mouse strain C57BL/6J (56 days, male) 0.4

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