MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:31.2 nTPM
HPA Brain:49.5 nTPM
GTEx:31.2 nTPM
FANTOM5:30.9 Scaled Tags Per Million
Pig:24.7 nTPM
Mouse:16.1 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 49.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
2586 Male, age 75, left hemisphere 54.5
2666 Male, age 74, left hemisphere 50.0
2019 Male, age 18, unknown 47.0
2828 Female, age 72, unknown 41.2
1830 Male, age 51, unknown 39.9
2411 Female, age 72, unknown 39.2
1870 Female, age 42, unknown 39.1
1833 Male, age 53, unknown 38.9
2219 Male, age 76, both hemispheres 38.0
1827 Male, age 72, unknown 36.2
Dorsal raphe nucleus
nTPM: 43.4
1828 Male, age 53, unknown 51.1
2047 Male, age 72, unknown 50.3
2016 Female, age 72, unknown 40.3
2750 Male, age 76, both hemispheres 37.8
2298 Female, age 72, unknown 37.6
Inferior colliculus
nTPM: 37.1
1890 Male, age 53, unknown 39.8
1848 Female, age 42, unknown 37.1
2097 Female, age 72, unknown 35.9
2849 Male, age 72, unknown 35.6
Median raphe nucleus
nTPM: 44.8
2220 Male, age 76, midline 44.8
Periaquaductal grey, anterior
nTPM: 34.6
1795 Male, age 51, unknown 36.2
2502 Female, age 75, unknown 34.9
1947 Male, age 18, unknown 32.6
Periaquaductal grey, dorsal
nTPM: 32.5
2464 Female, age 72, unknown 34.4
1831 Male, age 72, unknown 33.7
1840 Male, age 53, unknown 31.5
2850 Male, age 76, both hemispheres 30.6
Periaquaductal grey, lateral
nTPM: 30.9
2272 Male, age 74, both hemispheres 31.3
2140 Male, age 76, both hemispheres 31.2
2053 Male, age 18, unknown 30.3
Pretectal area
nTPM: 34.8
2407 Male, age 75, both hemispheres 41.7
1817 Female, age 42, unknown 39.2
2007 Male, age 72, unknown 37.6
2667 Female, age 75, unknown 36.1
1816 Male, age 51, unknown 35.4
2825 Male, age 18, unknown 35.0
1944 Female, age 72, unknown 34.9
1815 Male, age 53, unknown 33.6
2224 Female, age 72, unknown 33.3
2316 Male, age 76, right hemisphere 28.8
2273 Male, age 74, both hemispheres 27.7
Red nucleus
nTPM: 43.2
2584 Male, age 75, left hemisphere 48.1
2588 Male, age 74, left hemisphere 48.0
2227 Male, age 72, unknown 46.0
1865 Male, age 51, unknown 45.0
2785 Male, age 18, unknown 44.6
2769 Male, age 72, unknown 43.8
1821 Female, age 72, unknown 42.6
2503 Female, age 72, unknown 41.3
1954 Female, age 42, unknown 41.1
2725 Female, age 75, unknown 41.0
1904 Male, age 53, unknown 40.4
2823 Male, age 76, right hemisphere 36.8
Substantia nigra
nTPM: 49.5
1916 Female, age 42, unknown 61.1
2665 Male, age 74, both hemispheres 59.4
2699 Male, age 18, unknown 57.2
1941 Male, age 53, unknown 54.7
1851 Male, age 51, unknown 49.9
2583 Male, age 75, right hemisphere 49.4
2409 Female, age 72, unknown 46.5
2241 Male, age 72, unknown 40.1
2590 Female, age 75, unknown 39.9
1889 Female, age 72, unknown 37.0
Superior colliculus
nTPM: 36.6
2668 Female, age 75, unknown 44.5
2664 Male, age 75, both hemispheres 42.0
1995 Male, age 72, unknown 37.4
1839 Male, age 51, unknown 36.6
2087 Female, age 72, unknown 36.6
2587 Male, age 74, left hemisphere 36.5
1796 Male, age 53, unknown 35.8
1913 Female, age 42, unknown 35.8
1895 Male, age 76, right hemisphere 32.3
2261 Male, age 18, unknown 28.8
Ventral tegmental area
nTPM: 42.8
1915 Female, age 42, unknown 48.9
2223 Female, age 72, unknown 44.7
2410 Female, age 72, unknown 43.4
2218 Male, age 76, both hemispheres 43.2
1942 Male, age 51, unknown 39.2
2021 Male, age 53, unknown 37.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 31.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 31.2
Samples: 139

Max nTPM: 51.3
Min nTPM: 19.9
Std nTPM: 5.2
Median nTPM: 30.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 51.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 49.3
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 45.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 44.6
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 43.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 41.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 41.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 40.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 39.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 39.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 38.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 30.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 30.9
FF:10158-103A5 76 years, female 30.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 24.7
Samples: 4

Max nTPM: 27.0
Min nTPM: 21.3
Sample A Female 26.4
Sample B Female 23.9
Sample C Male 27.0
Sample D Male 21.3
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 27.7
Min nTPM: 19.9
Sample A Female 27.7
Sample B Female 22.8
Sample C Male 23.6
Sample D Male 19.9
Periaqueductal gray
nTPM: 20.8
Samples: 3

Max nTPM: 24.0
Min nTPM: 18.1
Sample B Female 20.4
Sample C Male 24.0
Sample D Male 18.1
Superior colliculi
nTPM: 22.9
Samples: 4

Max nTPM: 26.2
Min nTPM: 20.6
Sample A Female 22.4
Sample B Female 20.6
Sample C Male 26.2
Sample D Male 22.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 16.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.1
Samples: 4

Max nTPM: 17.0
Min nTPM: 15.4
Sample A Male 17.0
Sample B Male 15.9
Sample C Female 15.4
Sample D Female 16.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
68443063 Antisense, RP_050111_01_C09, Mouse strain C57BL/6J (56 days, male) 5.8

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