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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
261.8
nTPM
Monaco:
94.3
nTPM
Schmiedel:
52.6
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
261.8
HPA sample
nTPM
gdT-cell nTPM: 185.6
Samples: 6
Max nTPM: 223.2
Min nTPM: 133.0
P10809_1007
133.0
P10809_1022
223.2
P10809_1041
222.8
P10809_1060
162.8
P10809_1077
167.6
P10809_1098
204.0
MAIT T-cell nTPM: 261.9
Samples: 6
Max nTPM: 360.6
Min nTPM: 148.4
P10809_1006
148.4
P10809_1024
286.4
P10809_1043
302.3
P10809_1062
248.3
P10809_1083
225.1
P10809_1097
360.6
Memory CD4 T-cell nTPM: 229.5
Samples: 6
Max nTPM: 290.2
Min nTPM: 162.7
P10809_1014
162.7
P10809_1026
290.2
P10809_1045
250.9
P10809_1064
209.6
P10809_1086
204.7
P10809_1113
259.0
Memory CD8 T-cell nTPM: 215.5
Samples: 5
Max nTPM: 251.4
Min nTPM: 150.4
P10809_1012
150.4
P10809_1027
244.8
P10809_1046
244.4
P10809_1065
186.7
P10809_1111
251.4
Naive CD4 T-cell nTPM: 234.7
Samples: 6
Max nTPM: 352.1
Min nTPM: 136.4
P10809_1015
136.4
P10809_1030
273.1
P10809_1049
352.1
P10809_1068
224.9
P10809_1085
166.4
P10809_1112
255.1
Naive CD8 T-cell nTPM: 242.1
Samples: 6
Max nTPM: 290.5
Min nTPM: 189.5
P10809_1016
206.2
P10809_1031
290.5
P10809_1050
252.0
P10809_1069
234.0
P10809_1087
189.5
P10809_1110
280.4
T-reg nTPM: 240.7
Samples: 6
Max nTPM: 356.1
Min nTPM: 136.9
P10809_1018
136.9
P10809_1037
240.7
P10809_1056
356.1
P10809_1075
219.4
P10809_1094
252.3
P10809_1106
238.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
94.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 72.2
Samples: 4
Max nTPM: 97.6
Min nTPM: 59.7
RHH5202_R3573
59.7
RHH5230_R3602
61.7
RHH5259_R3631
69.6
RHH5288_R3660
97.6
Effector memory CD8 T-cell nTPM: 47.2
Samples: 4
Max nTPM: 59.6
Min nTPM: 31.3
RHH5203_R3574
59.6
RHH5231_R3603
40.9
RHH5260_R3632
57.1
RHH5289_R3661
31.3
MAIT T-cell nTPM: 75.3
Samples: 4
Max nTPM: 107.0
Min nTPM: 60.5
RHH5233_R3605
72.7
RHH5205_R3576
60.8
RHH5262_R3634
60.5
RHH5297_R3663
107.0
Memory CD4 T-cell TFH nTPM: 76.8
Samples: 4
Max nTPM: 122.3
Min nTPM: 50.8
RHH5300_R3666
70.7
RHH5236_R3608
122.3
RHH5265_R3637
50.8
RHH5208_R3579
63.3
Memory CD4 T-cell Th1 nTPM: 85.4
Samples: 4
Max nTPM: 134.6
Min nTPM: 58.6
RHH5210_R3581
58.6
RHH5302_R3668
134.6
RHH5238_R3610
86.4
RHH5267_R3639
62.0
Memory CD4 T-cell Th1/Th17 nTPM: 71.4
Samples: 4
Max nTPM: 90.6
Min nTPM: 50.9
RHH5303_R3669
90.6
RHH5211_R3582
74.9
RHH5239_R3611
50.9
RHH5268_R3640
69.3
Memory CD4 T-cell Th17 nTPM: 59.6
Samples: 4
Max nTPM: 77.6
Min nTPM: 47.8
RHH5304_R3670
61.9
RHH5212_R3583
77.6
RHH5240_R3612
47.8
RHH5269_R3641
50.9
Memory CD4 T-cell Th2 nTPM: 71.3
Samples: 4
Max nTPM: 85.5
Min nTPM: 58.2
RHH5305_R3671
85.5
RHH5213_R3584
61.8
RHH5241_R3613
79.5
RHH5270_R3642
58.2
Naive CD4 T-cell nTPM: 77.3
Samples: 4
Max nTPM: 117.3
Min nTPM: 38.9
RHH5306_R3672
90.6
RHH5214_R3585
117.3
RHH5242_R3614
38.9
RHH5271_R3643
62.4
Naive CD8 T-cell nTPM: 69.0
Samples: 4
Max nTPM: 82.9
Min nTPM: 60.8
RHH5201_R3572
60.8
RHH5229_R3601
61.8
RHH5258_R3630
82.9
RHH5287_R3659
70.6
Non-Vd2 gdTCR nTPM: 61.6
Samples: 4
Max nTPM: 91.0
Min nTPM: 37.2
RHH5235_R3607
37.2
RHH5264_R3636
67.9
RHH5207_R3578
50.1
RHH5299_R3665
91.0
T-reg nTPM: 78.2
Samples: 4
Max nTPM: 101.5
Min nTPM: 51.1
RHH5301_R3667
101.5
RHH5237_R3609
83.5
RHH5266_R3638
51.1
RHH5209_R3580
76.7
Terminal effector memory CD4 T-cell nTPM: 44.2
Samples: 2
Max nTPM: 51.1
Min nTPM: 37.2
RHH5243_R3615
37.2
RHH5272_R3644
51.1
Terminal effector memory CD8 T-cell nTPM: 78.1
Samples: 4
Max nTPM: 147.8
Min nTPM: 37.9
RHH5232_R3604
37.9
RHH5204_R3575
147.8
RHH5261_R3633
50.6
RHH5296_R3662
75.9
Vd2 gdTCR nTPM: 94.3
Samples: 4
Max nTPM: 135.4
Min nTPM: 57.6
RHH5234_R3606
67.9
RHH5206_R3577
135.4
RHH5263_R3635
57.6
RHH5298_R3664
116.4
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
