MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.8 nTPM
HPA Brain:33.2 nTPM
GTEx:3.8 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:33.2 nTPM
Mouse:24.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
1827 Male, age 72, unknown 30.3
2666 Male, age 74, left hemisphere 25.5
2411 Female, age 72, unknown 23.9
2219 Male, age 76, both hemispheres 23.8
1833 Male, age 53, unknown 23.5
1870 Female, age 42, unknown 22.9
2828 Female, age 72, unknown 22.8
2019 Male, age 18, unknown 18.8
1830 Male, age 51, unknown 18.4
2586 Male, age 75, left hemisphere 16.5
Dorsal raphe nucleus
nTPM: 20.3
2750 Male, age 76, both hemispheres 23.7
2298 Female, age 72, unknown 22.8
1828 Male, age 53, unknown 20.5
2047 Male, age 72, unknown 19.0
2016 Female, age 72, unknown 15.5
Inferior colliculus
nTPM: 21.6
1848 Female, age 42, unknown 25.2
2097 Female, age 72, unknown 24.1
2849 Male, age 72, unknown 20.9
1890 Male, age 53, unknown 16.2
Median raphe nucleus
nTPM: 26.0
2220 Male, age 76, midline 26.0
Periaquaductal grey, anterior
nTPM: 29.7
1947 Male, age 18, unknown 39.1
1795 Male, age 51, unknown 28.2
2502 Female, age 75, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 22.0
1840 Male, age 53, unknown 25.0
1831 Male, age 72, unknown 23.4
2464 Female, age 72, unknown 22.8
2850 Male, age 76, both hemispheres 16.9
Periaquaductal grey, lateral
nTPM: 22.5
2053 Male, age 18, unknown 27.2
2272 Male, age 74, both hemispheres 23.3
2140 Male, age 76, both hemispheres 17.0
Pretectal area
nTPM: 33.2
1816 Male, age 51, unknown 57.7
1944 Female, age 72, unknown 56.7
1815 Male, age 53, unknown 38.9
2007 Male, age 72, unknown 31.7
1817 Female, age 42, unknown 31.6
2667 Female, age 75, unknown 29.6
2224 Female, age 72, unknown 27.0
2825 Male, age 18, unknown 26.6
2316 Male, age 76, right hemisphere 24.0
2407 Male, age 75, both hemispheres 22.2
2273 Male, age 74, both hemispheres 19.6
Red nucleus
nTPM: 20.8
2823 Male, age 76, right hemisphere 26.0
2503 Female, age 72, unknown 24.6
1821 Female, age 72, unknown 22.6
1904 Male, age 53, unknown 21.6
2584 Male, age 75, left hemisphere 21.5
2785 Male, age 18, unknown 21.1
1865 Male, age 51, unknown 20.6
1954 Female, age 42, unknown 20.4
2725 Female, age 75, unknown 20.3
2588 Male, age 74, left hemisphere 18.6
2769 Male, age 72, unknown 16.5
2227 Male, age 72, unknown 16.2
Substantia nigra
nTPM: 21.3
1889 Female, age 72, unknown 28.5
2409 Female, age 72, unknown 27.1
2590 Female, age 75, unknown 25.8
2241 Male, age 72, unknown 23.5
2583 Male, age 75, right hemisphere 20.2
1851 Male, age 51, unknown 19.4
1941 Male, age 53, unknown 18.7
2665 Male, age 74, both hemispheres 18.4
1916 Female, age 42, unknown 18.0
2699 Male, age 18, unknown 13.8
Superior colliculus
nTPM: 31.1
2087 Female, age 72, unknown 48.4
2261 Male, age 18, unknown 36.8
2668 Female, age 75, unknown 34.6
1913 Female, age 42, unknown 34.3
1895 Male, age 76, right hemisphere 32.6
1796 Male, age 53, unknown 32.2
1995 Male, age 72, unknown 30.8
2587 Male, age 74, left hemisphere 21.5
1839 Male, age 51, unknown 21.1
2664 Male, age 75, both hemispheres 18.2
Ventral tegmental area
nTPM: 20.6
2410 Female, age 72, unknown 26.3
2218 Male, age 76, both hemispheres 24.2
1942 Male, age 51, unknown 20.7
1915 Female, age 42, unknown 17.8
2021 Male, age 53, unknown 17.2
2223 Female, age 72, unknown 17.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.8
Samples: 139

Max nTPM: 9.0
Min nTPM: 0.8
Std nTPM: 1.7
Median nTPM: 3.5
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 9.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 8.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 8.0
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 7.8
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 7.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 7.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 7.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 7.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 7.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 7.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 6.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 33.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.6
Samples: 4

Max nTPM: 37.0
Min nTPM: 11.6
Sample A Female 34.8
Sample B Female 18.8
Sample C Male 37.0
Sample D Male 11.6
Midbrain
nTPM: 33.2
Samples: 4

Max nTPM: 78.6
Min nTPM: 6.4
Sample A Female 6.4
Sample B Female 21.3
Sample C Male 78.6
Sample D Male 26.5
Periaqueductal gray
nTPM: 17.9
Samples: 3

Max nTPM: 20.6
Min nTPM: 16.3
Sample B Female 16.9
Sample C Male 20.6
Sample D Male 16.3
Superior colliculi
nTPM: 27.7
Samples: 4

Max nTPM: 46.5
Min nTPM: 16.0
Sample A Female 16.0
Sample B Female 16.5
Sample C Male 46.5
Sample D Male 31.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 24.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 24.4
Samples: 4

Max nTPM: 27.3
Min nTPM: 20.6
Sample A Male 20.6
Sample B Male 24.8
Sample C Female 27.3
Sample D Female 24.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
69736292 Antisense, RP_050503_04_E03, Mouse strain C57BL/6J (56 days, male) 0.1

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