MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:66.4 nTPM
HPA Brain:67.3 nTPM
GTEx:66.4 nTPM
FANTOM5:56.7 Scaled Tags Per Million
Pig:21.0 nTPM
Mouse:22.8 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 67.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.1
2666 Male, age 74, left hemisphere 73.6
2586 Male, age 75, left hemisphere 66.2
2828 Female, age 72, unknown 51.4
2019 Male, age 18, unknown 50.0
2411 Female, age 72, unknown 49.2
1830 Male, age 51, unknown 48.4
1833 Male, age 53, unknown 48.3
1870 Female, age 42, unknown 46.0
1827 Male, age 72, unknown 42.6
2219 Male, age 76, both hemispheres 35.1
Dorsal raphe nucleus
nTPM: 38.2
2750 Male, age 76, both hemispheres 43.9
1828 Male, age 53, unknown 42.2
2016 Female, age 72, unknown 39.5
2047 Male, age 72, unknown 35.9
2298 Female, age 72, unknown 29.8
Inferior colliculus
nTPM: 35.2
1890 Male, age 53, unknown 38.3
1848 Female, age 42, unknown 36.7
2849 Male, age 72, unknown 36.3
2097 Female, age 72, unknown 29.3
Median raphe nucleus
nTPM: 31.8
2220 Male, age 76, midline 31.8
Periaquaductal grey, anterior
nTPM: 37.8
1947 Male, age 18, unknown 39.2
1795 Male, age 51, unknown 37.2
2502 Female, age 75, unknown 37.0
Periaquaductal grey, dorsal
nTPM: 32.1
2464 Female, age 72, unknown 35.9
1831 Male, age 72, unknown 34.2
2850 Male, age 76, both hemispheres 29.8
1840 Male, age 53, unknown 28.6
Periaquaductal grey, lateral
nTPM: 29.3
2053 Male, age 18, unknown 32.4
2140 Male, age 76, both hemispheres 28.4
2272 Male, age 74, both hemispheres 27.0
Pretectal area
nTPM: 36.2
2007 Male, age 72, unknown 47.9
1815 Male, age 53, unknown 44.6
1817 Female, age 42, unknown 44.2
2407 Male, age 75, both hemispheres 39.9
2825 Male, age 18, unknown 39.5
1816 Male, age 51, unknown 36.5
2316 Male, age 76, right hemisphere 34.0
1944 Female, age 72, unknown 30.8
2667 Female, age 75, unknown 28.0
2224 Female, age 72, unknown 27.9
2273 Male, age 74, both hemispheres 25.3
Red nucleus
nTPM: 67.3
2588 Male, age 74, left hemisphere 99.2
2503 Female, age 72, unknown 73.6
1904 Male, age 53, unknown 70.9
1865 Male, age 51, unknown 68.4
2769 Male, age 72, unknown 68.3
2227 Male, age 72, unknown 67.6
2725 Female, age 75, unknown 66.3
1954 Female, age 42, unknown 63.1
1821 Female, age 72, unknown 62.3
2584 Male, age 75, left hemisphere 57.7
2785 Male, age 18, unknown 57.2
2823 Male, age 76, right hemisphere 53.1
Substantia nigra
nTPM: 44.4
2665 Male, age 74, both hemispheres 57.2
2583 Male, age 75, right hemisphere 54.5
2590 Female, age 75, unknown 47.2
1851 Male, age 51, unknown 46.5
2699 Male, age 18, unknown 44.9
1889 Female, age 72, unknown 43.4
1916 Female, age 42, unknown 41.6
1941 Male, age 53, unknown 40.4
2409 Female, age 72, unknown 36.9
2241 Male, age 72, unknown 31.7
Superior colliculus
nTPM: 41.3
2668 Female, age 75, unknown 49.1
2587 Male, age 74, left hemisphere 48.0
2664 Male, age 75, both hemispheres 47.6
1995 Male, age 72, unknown 44.9
1913 Female, age 42, unknown 42.5
1839 Male, age 51, unknown 41.2
2261 Male, age 18, unknown 36.4
1796 Male, age 53, unknown 35.8
2087 Female, age 72, unknown 34.4
1895 Male, age 76, right hemisphere 33.0
Ventral tegmental area
nTPM: 42.7
2223 Female, age 72, unknown 53.6
2410 Female, age 72, unknown 48.3
1915 Female, age 42, unknown 39.9
1942 Male, age 51, unknown 39.4
2218 Male, age 76, both hemispheres 37.8
2021 Male, age 53, unknown 37.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 66.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 66.4
Samples: 139

Max nTPM: 254.6
Min nTPM: 16.4
Std nTPM: 39.3
Median nTPM: 52.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 254.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 196.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 191.5
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 158.4
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 152.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 151.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 148.2
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 144.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 141.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 141.1
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 134.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 56.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 56.7
FF:10158-103A5 76 years, female 56.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 20.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 16.9
Sample A Female 22.5
Sample B Female 16.9
Sample C Male 21.2
Sample D Male 19.4
Midbrain
nTPM: 21.0
Samples: 4

Max nTPM: 26.1
Min nTPM: 18.2
Sample A Female 26.1
Sample B Female 21.0
Sample C Male 18.2
Sample D Male 18.6
Periaqueductal gray
nTPM: 18.3
Samples: 3

Max nTPM: 19.6
Min nTPM: 16.7
Sample B Female 18.6
Sample C Male 19.6
Sample D Male 16.7
Superior colliculi
nTPM: 19.5
Samples: 4

Max nTPM: 21.6
Min nTPM: 15.7
Sample A Female 21.6
Sample B Female 15.7
Sample C Male 20.2
Sample D Male 20.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.9
Samples: 4

Max nTPM: 24.2
Min nTPM: 21.2
Sample A Male 24.2
Sample B Male 23.3
Sample C Female 22.7
Sample D Female 21.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
587432 Antisense, RP_040831_01_G06, Mouse strain C57BL/6J (56 days, male) 0.2

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