HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:43.0 nTPM
HPA Brain:35.0 nTPM
GTEx:43.0 nTPM
FANTOM5:35.6 Scaled Tags Per Million
Pig:18.2 nTPM
Mouse:29.0 nTPM
Allen mouse:1.1 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA024204
Glial cells Not detected
Neuronal cells High


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 35.0
Sample id Sample description nTPM
Hippocampus
nTPM: 32.2
2529 Female, age 94, left hemisphere 35.0
1898 Male, age 80, left hemisphere 33.6
2621 Female, age 67, right hemisphere 33.4
1855 Male, age 76, left hemisphere 32.1
1911 Female, age 85, right hemisphere 30.0
2148 Female, age 91, left hemisphere 29.4
Dentate gyrus
nTPM: 32.1
2530 Female, age 94, left hemisphere 56.5
2010 Male, age 76, both hemispheres 31.0
2531 Female, age 67, both hemispheres 30.2
1927 Female, age 91, both hemispheres 27.7
2246 Female, age 85, both hemispheres 25.1
2528 Male, age 74, both hemispheres 21.9
Entorhinal gyrus
nTPM: 35.0
2686 Male, age 75, right hemisphere 47.9
2117 Female, age 91, right hemisphere 36.1
2764 Male, age 80, right hemisphere 35.3
2613 Female, age 94, left hemisphere 31.0
1938 Female, age 85, left hemisphere 30.3
1787 Male, age 76, left hemisphere 29.7
Hippocampus, CA1
nTPM: 25.8
2749 Male, age 80, left hemisphere 31.9
1873 Female, age 85, both hemispheres 26.9
2082 Female, age 91, right hemisphere 26.0
2045 Male, age 76, both hemispheres 23.0
2527 Male, age 74, both hemispheres 21.2
Hippocampus, CA2
nTPM: 31.8
1963 Male, age 80, left hemisphere 43.6
2437 Female, age 94, left hemisphere 34.3
1892 Male, age 76, both hemispheres 33.4
1940 Female, age 85, left hemisphere 28.3
2113 Female, age 91, right hemisphere 26.9
2249 Male, age 74, both hemispheres 24.2
Hippocampus, CA3
nTPM: 24.4
2861 Female, age 67, both hemispheres 29.9
1891 Female, age 85, both hemispheres 29.6
1867 Male, age 76, both hemispheres 26.9
2620 Female, age 94, left hemisphere 23.0
2137 Male, age 80, left hemisphere 22.2
2436 Male, age 74, both hemispheres 15.0
Parahippocampal cortex
nTPM: 26.7
2532 Female, age 72, left hemisphere 32.3
2692 Male, age 74, both hemispheres 30.6
1990 Female, age 91, right hemisphere 30.2
2622 Female, age 67, right hemisphere 29.7
2245 Female, age 91, both hemispheres 27.8
1933 Female, age 85, both hemispheres 26.4
1850 Male, age 80, both hemispheres 26.2
2018 Male, age 76, both hemispheres 25.0
2693 Female, age 94, both hemispheres 19.7
2250 Female, age 67, right hemisphere 19.4
Perirhinal gyrus
nTPM: 23.1
1847 Female, age 91, left hemisphere 27.5
1794 Male, age 80, right hemisphere 24.3
2848 Male, age 76, right hemisphere 24.0
1841 Female, age 85, right hemisphere 22.3
2521 Female, age 94, right hemisphere 17.3
Subiculum
nTPM: 31.4
2438 Female, age 94, left hemisphere 37.6
1901 Male, age 80, both hemispheres 34.9
2042 Male, age 76, both hemispheres 33.8
1977 Female, age 85, both hemispheres 30.2
2729 Female, age 91, right hemisphere 29.7
2619 Male, age 74, both hemispheres 22.5

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 43.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 43.0
Samples: 197

Max nTPM: 136.1
Min nTPM: 12.8
Std nTPM: 20.7
Median nTPM: 38.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 136.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 131.1
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 106.5
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 105.3
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 97.6
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 97.2
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 94.7
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 92.7
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 90.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 85.0
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 84.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 35.6
FF:10153-102I9 76 years, female 42.2
FF:10169-103B7 60 years, female 29.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 18.2
Pig sample Sample description nTPM
Subiculum
nTPM: 17.0
Samples: 4

Max nTPM: 20.7
Min nTPM: 14.7
Sample A Female 20.7
Sample B Female 16.1
Sample C Male 16.5
Sample D Male 14.7
Dorsal hippocampus
nTPM: 18.2
Samples: 4

Max nTPM: 21.8
Min nTPM: 13.4
Sample A Female 21.8
Sample B Female 19.3
Sample C Male 18.1
Sample D Male 13.4
Entorhinal cortex
nTPM: 17.4
Samples: 4

Max nTPM: 18.4
Min nTPM: 16.1
Sample A Female 17.3
Sample B Female 18.4
Sample C Male 17.6
Sample D Male 16.1
Ventral hippocampus
nTPM: 18.1
Samples: 4

Max nTPM: 22.0
Min nTPM: 14.3
Sample A Female 17.3
Sample B Female 14.3
Sample C Male 22.0
Sample D Male 18.9

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 29.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 29.0
Samples: 4

Max nTPM: 34.0
Min nTPM: 25.9
Sample A Male 28.6
Sample B Male 34.0
Sample C Female 25.9
Sample D Female 27.6
Hippocampal formation
nTPM: 27.4
Samples: 4

Max nTPM: 31.3
Min nTPM: 25.0
Sample A Male 26.9
Sample B Male 26.4
Sample C Female 31.3
Sample D Female 25.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.1
587432 Antisense, RP_040831_01_G06, Mouse strain C57BL/6J (56 days, male) 1.1

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