MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.9 nTPM
HPA Brain:39.4 nTPM
GTEx:14.9 nTPM
FANTOM5:18.5 Scaled Tags Per Million
Pig:11.0 nTPM
Mouse:12.0 nTPM
Allen mouse:6.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.5
2586 Male, age 75, left hemisphere 50.6
2666 Male, age 74, left hemisphere 40.7
2828 Female, age 72, unknown 40.3
2411 Female, age 72, unknown 39.6
1827 Male, age 72, unknown 38.8
2019 Male, age 18, unknown 38.4
1870 Female, age 42, unknown 36.0
1833 Male, age 53, unknown 34.6
2219 Male, age 76, both hemispheres 33.4
1830 Male, age 51, unknown 33.0
Dorsal raphe nucleus
nTPM: 32.0
2016 Female, age 72, unknown 37.7
2750 Male, age 76, both hemispheres 34.2
1828 Male, age 53, unknown 31.6
2298 Female, age 72, unknown 28.4
2047 Male, age 72, unknown 28.0
Inferior colliculus
nTPM: 34.1
1890 Male, age 53, unknown 36.1
2097 Female, age 72, unknown 34.1
2849 Male, age 72, unknown 33.3
1848 Female, age 42, unknown 32.9
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 39.4
2502 Female, age 75, unknown 57.0
1947 Male, age 18, unknown 31.7
1795 Male, age 51, unknown 29.7
Periaquaductal grey, dorsal
nTPM: 34.3
1840 Male, age 53, unknown 42.6
2464 Female, age 72, unknown 38.5
1831 Male, age 72, unknown 31.6
2850 Male, age 76, both hemispheres 24.5
Periaquaductal grey, lateral
nTPM: 30.3
2053 Male, age 18, unknown 34.0
2140 Male, age 76, both hemispheres 32.2
2272 Male, age 74, both hemispheres 24.6
Pretectal area
nTPM: 37.3
2667 Female, age 75, unknown 46.4
1816 Male, age 51, unknown 41.5
2007 Male, age 72, unknown 41.3
1944 Female, age 72, unknown 38.4
2407 Male, age 75, both hemispheres 37.8
1817 Female, age 42, unknown 37.3
1815 Male, age 53, unknown 35.4
2316 Male, age 76, right hemisphere 35.1
2224 Female, age 72, unknown 34.2
2825 Male, age 18, unknown 34.2
2273 Male, age 74, both hemispheres 28.6
Red nucleus
nTPM: 32.5
2588 Male, age 74, left hemisphere 44.1
2785 Male, age 18, unknown 39.8
2584 Male, age 75, left hemisphere 38.3
2769 Male, age 72, unknown 36.3
2227 Male, age 72, unknown 32.9
1904 Male, age 53, unknown 32.7
1821 Female, age 72, unknown 32.0
2503 Female, age 72, unknown 31.1
1865 Male, age 51, unknown 29.1
2823 Male, age 76, right hemisphere 28.0
1954 Female, age 42, unknown 27.8
2725 Female, age 75, unknown 18.5
Substantia nigra
nTPM: 36.3
2665 Male, age 74, both hemispheres 51.6
1851 Male, age 51, unknown 47.6
2409 Female, age 72, unknown 37.3
2583 Male, age 75, right hemisphere 36.3
1889 Female, age 72, unknown 35.9
1941 Male, age 53, unknown 33.6
2699 Male, age 18, unknown 32.4
1916 Female, age 42, unknown 31.4
2241 Male, age 72, unknown 31.4
2590 Female, age 75, unknown 25.0
Superior colliculus
nTPM: 37.9
2668 Female, age 75, unknown 47.9
2587 Male, age 74, left hemisphere 45.1
1995 Male, age 72, unknown 39.6
2261 Male, age 18, unknown 37.6
1839 Male, age 51, unknown 35.8
2087 Female, age 72, unknown 35.3
1895 Male, age 76, right hemisphere 34.7
1796 Male, age 53, unknown 34.6
2664 Male, age 75, both hemispheres 34.3
1913 Female, age 42, unknown 33.9
Ventral tegmental area
nTPM: 32.5
1942 Male, age 51, unknown 36.5
2410 Female, age 72, unknown 35.9
1915 Female, age 42, unknown 33.9
2223 Female, age 72, unknown 31.6
2021 Male, age 53, unknown 31.5
2218 Male, age 76, both hemispheres 26.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.9
Samples: 139

Max nTPM: 32.5
Min nTPM: 5.2
Std nTPM: 4.7
Median nTPM: 14.0
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 32.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 27.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 27.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 27.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 26.7
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 26.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 24.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 24.4
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 23.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 23.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 23.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.5
FF:10158-103A5 76 years, female 18.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 10.7
Samples: 4

Max nTPM: 13.5
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 9.9
Sample C Male 11.6
Sample D Male 13.5
Midbrain
nTPM: 9.8
Samples: 4

Max nTPM: 12.2
Min nTPM: 7.7
Sample A Female 7.7
Sample B Female 9.7
Sample C Male 9.5
Sample D Male 12.2
Periaqueductal gray
nTPM: 11.0
Samples: 3

Max nTPM: 12.5
Min nTPM: 10.0
Sample B Female 10.0
Sample C Male 10.5
Sample D Male 12.5
Superior colliculi
nTPM: 9.7
Samples: 4

Max nTPM: 11.8
Min nTPM: 8.4
Sample A Female 8.6
Sample B Female 8.4
Sample C Male 9.8
Sample D Male 11.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.0
Samples: 4

Max nTPM: 14.7
Min nTPM: 9.7
Sample A Male 14.7
Sample B Male 9.7
Sample C Female 11.4
Sample D Female 12.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.7
68161454 Antisense, RP_041122_01_C07, Mouse strain C57BL/6J (56 days, male) 6.7

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