MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:1.1 nTPM
HPA Brain:16.6 nTPM
GTEx:1.1 nTPM
FANTOM5:10.4 Scaled Tags Per Million
Pig:6.4 nTPM
Mouse:12.0 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.7
1833 Male, age 53, unknown 18.7
1830 Male, age 51, unknown 18.5
2219 Male, age 76, both hemispheres 18.4
2666 Male, age 74, left hemisphere 15.0
1827 Male, age 72, unknown 14.5
2019 Male, age 18, unknown 13.8
2828 Female, age 72, unknown 13.6
1870 Female, age 42, unknown 12.4
2411 Female, age 72, unknown 11.5
2586 Male, age 75, left hemisphere 10.9
Dorsal raphe nucleus
nTPM: 14.2
2016 Female, age 72, unknown 15.1
2047 Male, age 72, unknown 14.7
1828 Male, age 53, unknown 14.5
2750 Male, age 76, both hemispheres 13.7
2298 Female, age 72, unknown 12.8
Inferior colliculus
nTPM: 16.2
2849 Male, age 72, unknown 19.6
2097 Female, age 72, unknown 16.5
1848 Female, age 42, unknown 15.4
1890 Male, age 53, unknown 13.4
Median raphe nucleus
nTPM: 15.1
2220 Male, age 76, midline 15.1
Periaquaductal grey, anterior
nTPM: 14.6
1947 Male, age 18, unknown 18.5
1795 Male, age 51, unknown 14.7
2502 Female, age 75, unknown 10.7
Periaquaductal grey, dorsal
nTPM: 16.0
2464 Female, age 72, unknown 17.8
2850 Male, age 76, both hemispheres 16.1
1840 Male, age 53, unknown 15.7
1831 Male, age 72, unknown 14.6
Periaquaductal grey, lateral
nTPM: 16.6
2272 Male, age 74, both hemispheres 19.4
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 14.0
Pretectal area
nTPM: 16.1
2273 Male, age 74, both hemispheres 20.5
2667 Female, age 75, unknown 20.0
2407 Male, age 75, both hemispheres 19.2
2825 Male, age 18, unknown 18.7
1944 Female, age 72, unknown 16.6
2224 Female, age 72, unknown 16.3
2316 Male, age 76, right hemisphere 14.7
1815 Male, age 53, unknown 13.3
1817 Female, age 42, unknown 13.3
2007 Male, age 72, unknown 12.6
1816 Male, age 51, unknown 12.4
Red nucleus
nTPM: 14.3
2725 Female, age 75, unknown 17.7
1954 Female, age 42, unknown 16.5
2584 Male, age 75, left hemisphere 15.8
2823 Male, age 76, right hemisphere 15.8
1865 Male, age 51, unknown 15.4
1904 Male, age 53, unknown 14.4
2227 Male, age 72, unknown 14.2
2785 Male, age 18, unknown 12.6
1821 Female, age 72, unknown 12.5
2769 Male, age 72, unknown 12.4
2503 Female, age 72, unknown 12.3
2588 Male, age 74, left hemisphere 12.0
Substantia nigra
nTPM: 14.3
2590 Female, age 75, unknown 17.2
2583 Male, age 75, right hemisphere 16.6
2409 Female, age 72, unknown 16.5
2241 Male, age 72, unknown 16.2
1941 Male, age 53, unknown 15.3
2699 Male, age 18, unknown 14.0
1889 Female, age 72, unknown 13.4
2665 Male, age 74, both hemispheres 11.8
1916 Female, age 42, unknown 11.3
1851 Male, age 51, unknown 10.2
Superior colliculus
nTPM: 15.9
2664 Male, age 75, both hemispheres 18.6
1895 Male, age 76, right hemisphere 17.8
1839 Male, age 51, unknown 17.0
1913 Female, age 42, unknown 16.8
1995 Male, age 72, unknown 16.8
2087 Female, age 72, unknown 16.3
2587 Male, age 74, left hemisphere 16.1
2261 Male, age 18, unknown 14.4
1796 Male, age 53, unknown 13.8
2668 Female, age 75, unknown 10.8
Ventral tegmental area
nTPM: 14.4
2021 Male, age 53, unknown 16.3
1942 Male, age 51, unknown 16.0
2218 Male, age 76, both hemispheres 15.8
2223 Female, age 72, unknown 14.3
1915 Female, age 42, unknown 11.9
2410 Female, age 72, unknown 11.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 1.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 1.1
Samples: 139

Max nTPM: 5.0
Min nTPM: 0.2
Std nTPM: 0.6
Median nTPM: 0.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 5.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 3.8
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 2.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 2.3
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 2.3
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 2.2
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 2.0
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 2.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 2.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 1.9
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 1.9
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 10.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.4
FF:10158-103A5 76 years, female 10.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.6
Samples: 4

Max nTPM: 5.3
Min nTPM: 4.0
Sample A Female 4.3
Sample B Female 5.3
Sample C Male 4.8
Sample D Male 4.0
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.3
Sample A Female 5.3
Sample B Female 5.8
Sample C Male 5.7
Sample D Male 6.7
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 7.0
Min nTPM: 5.7
Sample B Female 5.7
Sample C Male 6.5
Sample D Male 7.0
Superior colliculi
nTPM: 5.7
Samples: 4

Max nTPM: 6.7
Min nTPM: 5.2
Sample A Female 5.2
Sample B Female 6.7
Sample C Male 5.5
Sample D Male 5.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 12.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 12.1
Samples: 4

Max nTPM: 12.5
Min nTPM: 11.6
Sample A Male 12.4
Sample B Male 11.7
Sample C Female 11.6
Sample D Female 12.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74635427 Antisense, RP_060215_03_H01, Mouse strain C57BL/6J (56 days, male) 0.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.


contact@proteinatlas.org