MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.5 nTPM
HPA Brain:22.0 nTPM
GTEx:23.5 nTPM
FANTOM5:12.9 Scaled Tags Per Million
Pig:9.7 nTPM
Mouse:10.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 22.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.9
2828 Female, age 72, unknown 21.5
2586 Male, age 75, left hemisphere 19.3
1870 Female, age 42, unknown 18.7
1827 Male, age 72, unknown 18.3
2219 Male, age 76, both hemispheres 14.4
2411 Female, age 72, unknown 14.4
1830 Male, age 51, unknown 14.1
1833 Male, age 53, unknown 13.7
2666 Male, age 74, left hemisphere 13.3
2019 Male, age 18, unknown 11.1
Dorsal raphe nucleus
nTPM: 18.2
2016 Female, age 72, unknown 23.3
1828 Male, age 53, unknown 19.9
2298 Female, age 72, unknown 19.3
2047 Male, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 11.3
Inferior colliculus
nTPM: 19.7
1848 Female, age 42, unknown 24.9
2849 Male, age 72, unknown 18.3
2097 Female, age 72, unknown 18.1
1890 Male, age 53, unknown 17.5
Median raphe nucleus
nTPM: 10.5
2220 Male, age 76, midline 10.5
Periaquaductal grey, anterior
nTPM: 20.0
1795 Male, age 51, unknown 21.1
1947 Male, age 18, unknown 20.9
2502 Female, age 75, unknown 17.8
Periaquaductal grey, dorsal
nTPM: 21.4
2850 Male, age 76, both hemispheres 24.1
1831 Male, age 72, unknown 22.7
1840 Male, age 53, unknown 21.9
2464 Female, age 72, unknown 16.9
Periaquaductal grey, lateral
nTPM: 22.0
2053 Male, age 18, unknown 26.9
2140 Male, age 76, both hemispheres 23.4
2272 Male, age 74, both hemispheres 15.7
Pretectal area
nTPM: 21.2
2667 Female, age 75, unknown 28.2
2316 Male, age 76, right hemisphere 25.8
2273 Male, age 74, both hemispheres 22.9
1944 Female, age 72, unknown 22.5
1816 Male, age 51, unknown 22.2
1815 Male, age 53, unknown 21.9
2825 Male, age 18, unknown 21.4
2224 Female, age 72, unknown 20.4
1817 Female, age 42, unknown 19.9
2407 Male, age 75, both hemispheres 14.3
2007 Male, age 72, unknown 13.2
Red nucleus
nTPM: 16.8
2503 Female, age 72, unknown 21.3
1821 Female, age 72, unknown 20.7
1954 Female, age 42, unknown 20.6
2725 Female, age 75, unknown 19.5
2823 Male, age 76, right hemisphere 18.6
1904 Male, age 53, unknown 17.8
2769 Male, age 72, unknown 16.9
2227 Male, age 72, unknown 16.4
1865 Male, age 51, unknown 15.2
2588 Male, age 74, left hemisphere 13.5
2785 Male, age 18, unknown 10.5
2584 Male, age 75, left hemisphere 10.3
Substantia nigra
nTPM: 17.8
2699 Male, age 18, unknown 25.5
1916 Female, age 42, unknown 22.8
1889 Female, age 72, unknown 20.1
2241 Male, age 72, unknown 18.8
1851 Male, age 51, unknown 18.0
2409 Female, age 72, unknown 16.4
2583 Male, age 75, right hemisphere 15.5
2665 Male, age 74, both hemispheres 14.9
1941 Male, age 53, unknown 13.2
2590 Female, age 75, unknown 12.8
Superior colliculus
nTPM: 20.0
1995 Male, age 72, unknown 24.5
2087 Female, age 72, unknown 22.5
2261 Male, age 18, unknown 21.4
1796 Male, age 53, unknown 21.3
2664 Male, age 75, both hemispheres 19.8
1839 Male, age 51, unknown 19.7
1913 Female, age 42, unknown 18.5
2668 Female, age 75, unknown 18.5
1895 Male, age 76, right hemisphere 18.0
2587 Male, age 74, left hemisphere 16.1
Ventral tegmental area
nTPM: 15.9
2021 Male, age 53, unknown 18.4
2410 Female, age 72, unknown 18.4
1915 Female, age 42, unknown 17.1
1942 Male, age 51, unknown 16.0
2218 Male, age 76, both hemispheres 14.0
2223 Female, age 72, unknown 11.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.5
Samples: 139

Max nTPM: 67.5
Min nTPM: 5.9
Std nTPM: 10.6
Median nTPM: 21.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 67.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 54.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 50.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 48.1
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 46.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 46.6
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 43.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 42.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 41.9
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 40.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 12.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.9
FF:10158-103A5 76 years, female 12.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 8.6
Samples: 4

Max nTPM: 10.7
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 7.4
Sample C Male 9.8
Sample D Male 10.7
Midbrain
nTPM: 7.9
Samples: 4

Max nTPM: 9.1
Min nTPM: 7.1
Sample A Female 7.1
Sample B Female 7.7
Sample C Male 9.1
Sample D Male 7.8
Periaqueductal gray
nTPM: 9.7
Samples: 3

Max nTPM: 10.9
Min nTPM: 7.5
Sample B Female 7.5
Sample C Male 10.9
Sample D Male 10.7
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 8.7
Min nTPM: 4.7
Sample A Female 4.7
Sample B Female 5.0
Sample C Male 8.7
Sample D Male 7.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.9
Samples: 4

Max nTPM: 11.3
Min nTPM: 10.0
Sample A Male 11.3
Sample B Male 11.2
Sample C Female 10.9
Sample D Female 10.0

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