MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:53.2 nTPM
HPA Brain:62.4 nTPM
GTEx:53.2 nTPM
FANTOM5:94.8 Scaled Tags Per Million
Pig:46.8 nTPM
Mouse:53.6 nTPM
Allen mouse:2.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.5
1870 Female, age 42, unknown 62.3
2411 Female, age 72, unknown 58.0
1833 Male, age 53, unknown 55.9
1827 Male, age 72, unknown 55.8
2828 Female, age 72, unknown 54.2
2219 Male, age 76, both hemispheres 53.1
2586 Male, age 75, left hemisphere 51.5
1830 Male, age 51, unknown 51.3
2019 Male, age 18, unknown 49.1
2666 Male, age 74, left hemisphere 43.6
Dorsal raphe nucleus
nTPM: 59.0
2750 Male, age 76, both hemispheres 67.4
2298 Female, age 72, unknown 62.0
2047 Male, age 72, unknown 60.9
1828 Male, age 53, unknown 54.3
2016 Female, age 72, unknown 50.2
Inferior colliculus
nTPM: 55.4
2097 Female, age 72, unknown 58.1
1890 Male, age 53, unknown 55.1
1848 Female, age 42, unknown 54.2
2849 Male, age 72, unknown 54.2
Median raphe nucleus
nTPM: 62.4
2220 Male, age 76, midline 62.4
Periaquaductal grey, anterior
nTPM: 55.3
1947 Male, age 18, unknown 58.7
1795 Male, age 51, unknown 54.7
2502 Female, age 75, unknown 52.5
Periaquaductal grey, dorsal
nTPM: 60.1
1840 Male, age 53, unknown 65.1
1831 Male, age 72, unknown 63.0
2850 Male, age 76, both hemispheres 58.9
2464 Female, age 72, unknown 53.1
Periaquaductal grey, lateral
nTPM: 61.3
2053 Male, age 18, unknown 66.2
2140 Male, age 76, both hemispheres 59.0
2272 Male, age 74, both hemispheres 58.7
Pretectal area
nTPM: 61.6
1816 Male, age 51, unknown 67.4
2825 Male, age 18, unknown 65.4
2007 Male, age 72, unknown 64.2
2224 Female, age 72, unknown 63.6
1944 Female, age 72, unknown 62.6
1817 Female, age 42, unknown 61.4
1815 Male, age 53, unknown 60.8
2273 Male, age 74, both hemispheres 60.2
2667 Female, age 75, unknown 59.7
2316 Male, age 76, right hemisphere 59.4
2407 Male, age 75, both hemispheres 52.6
Red nucleus
nTPM: 54.8
1821 Female, age 72, unknown 62.5
2823 Male, age 76, right hemisphere 61.0
1865 Male, age 51, unknown 55.8
1954 Female, age 42, unknown 55.5
2503 Female, age 72, unknown 55.1
2588 Male, age 74, left hemisphere 54.2
1904 Male, age 53, unknown 54.1
2584 Male, age 75, left hemisphere 52.5
2769 Male, age 72, unknown 52.4
2227 Male, age 72, unknown 52.1
2785 Male, age 18, unknown 51.3
2725 Female, age 75, unknown 50.7
Substantia nigra
nTPM: 56.7
2590 Female, age 75, unknown 63.0
2409 Female, age 72, unknown 60.6
1916 Female, age 42, unknown 59.6
1889 Female, age 72, unknown 59.4
1851 Male, age 51, unknown 59.3
1941 Male, age 53, unknown 57.1
2241 Male, age 72, unknown 54.9
2583 Male, age 75, right hemisphere 53.6
2665 Male, age 74, both hemispheres 51.8
2699 Male, age 18, unknown 47.7
Superior colliculus
nTPM: 56.3
2261 Male, age 18, unknown 62.9
1895 Male, age 76, right hemisphere 60.0
2087 Female, age 72, unknown 59.7
2668 Female, age 75, unknown 58.8
2587 Male, age 74, left hemisphere 56.4
1913 Female, age 42, unknown 55.1
1839 Male, age 51, unknown 54.4
1995 Male, age 72, unknown 54.2
1796 Male, age 53, unknown 52.5
2664 Male, age 75, both hemispheres 49.5
Ventral tegmental area
nTPM: 55.4
2021 Male, age 53, unknown 57.0
1915 Female, age 42, unknown 56.6
2218 Male, age 76, both hemispheres 56.2
2223 Female, age 72, unknown 55.8
2410 Female, age 72, unknown 55.5
1942 Male, age 51, unknown 51.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.2
Samples: 139

Max nTPM: 90.0
Min nTPM: 26.7
Std nTPM: 9.8
Median nTPM: 51.2
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 90.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 88.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 83.5
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 75.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 73.4
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 70.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 70.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 69.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 69.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 68.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 67.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 94.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 94.8
FF:10158-103A5 76 years, female 94.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 46.9
Samples: 4

Max nTPM: 68.0
Min nTPM: 29.8
Sample A Female 68.0
Sample B Female 37.5
Sample C Male 52.1
Sample D Male 29.8
Midbrain
nTPM: 46.9
Samples: 4

Max nTPM: 61.6
Min nTPM: 30.7
Sample A Female 61.6
Sample B Female 46.7
Sample C Male 48.4
Sample D Male 30.7
Periaqueductal gray
nTPM: 42.4
Samples: 3

Max nTPM: 45.1
Min nTPM: 41.0
Sample B Female 41.0
Sample C Male 45.1
Sample D Male 41.2
Superior colliculi
nTPM: 37.9
Samples: 4

Max nTPM: 46.0
Min nTPM: 34.0
Sample A Female 34.0
Sample B Female 37.3
Sample C Male 46.0
Sample D Male 34.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 53.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 53.6
Samples: 4

Max nTPM: 55.6
Min nTPM: 49.9
Sample A Male 55.6
Sample B Male 53.8
Sample C Female 55.1
Sample D Female 49.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.2
68797499 Antisense, RP_050125_02_E10, Mouse strain C57BL/6J (56 days, male) 2.2

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