MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:62.4 nTPM
HPA Brain:39.7 nTPM
GTEx:62.4 nTPM
FANTOM5:26.7 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:2.1 nTPM
Allen mouse:2.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.3
1870 Female, age 42, unknown 30.3
1830 Male, age 51, unknown 24.6
2411 Female, age 72, unknown 23.9
1833 Male, age 53, unknown 23.4
2828 Female, age 72, unknown 22.9
1827 Male, age 72, unknown 22.4
2019 Male, age 18, unknown 21.1
2666 Male, age 74, left hemisphere 21.1
2586 Male, age 75, left hemisphere 19.1
2219 Male, age 76, both hemispheres 14.2
Dorsal raphe nucleus
nTPM: 32.0
2016 Female, age 72, unknown 40.2
2298 Female, age 72, unknown 38.1
1828 Male, age 53, unknown 33.4
2047 Male, age 72, unknown 25.0
2750 Male, age 76, both hemispheres 23.4
Inferior colliculus
nTPM: 22.5
2097 Female, age 72, unknown 25.2
1848 Female, age 42, unknown 22.3
1890 Male, age 53, unknown 22.3
2849 Male, age 72, unknown 20.2
Median raphe nucleus
nTPM: 24.1
2220 Male, age 76, midline 24.1
Periaquaductal grey, anterior
nTPM: 27.0
2502 Female, age 75, unknown 28.0
1795 Male, age 51, unknown 26.7
1947 Male, age 18, unknown 26.3
Periaquaductal grey, dorsal
nTPM: 33.4
2850 Male, age 76, both hemispheres 49.3
1840 Male, age 53, unknown 32.0
1831 Male, age 72, unknown 27.2
2464 Female, age 72, unknown 25.1
Periaquaductal grey, lateral
nTPM: 39.7
2272 Male, age 74, both hemispheres 47.8
2140 Male, age 76, both hemispheres 40.9
2053 Male, age 18, unknown 30.3
Pretectal area
nTPM: 24.8
2273 Male, age 74, both hemispheres 46.1
2224 Female, age 72, unknown 34.3
2316 Male, age 76, right hemisphere 27.7
2825 Male, age 18, unknown 25.1
1815 Male, age 53, unknown 22.8
1817 Female, age 42, unknown 22.1
2667 Female, age 75, unknown 21.5
2407 Male, age 75, both hemispheres 20.6
2007 Male, age 72, unknown 17.9
1944 Female, age 72, unknown 17.5
1816 Male, age 51, unknown 16.8
Red nucleus
nTPM: 26.2
1821 Female, age 72, unknown 32.6
2227 Male, age 72, unknown 32.0
1865 Male, age 51, unknown 30.9
2785 Male, age 18, unknown 28.6
2769 Male, age 72, unknown 28.2
1954 Female, age 42, unknown 27.4
1904 Male, age 53, unknown 26.2
2823 Male, age 76, right hemisphere 25.4
2725 Female, age 75, unknown 25.0
2503 Female, age 72, unknown 24.5
2588 Male, age 74, left hemisphere 17.2
2584 Male, age 75, left hemisphere 16.2
Substantia nigra
nTPM: 22.2
2699 Male, age 18, unknown 29.0
1851 Male, age 51, unknown 25.2
2590 Female, age 75, unknown 24.8
2241 Male, age 72, unknown 23.0
1916 Female, age 42, unknown 22.7
2665 Male, age 74, both hemispheres 21.3
1941 Male, age 53, unknown 20.6
1889 Female, age 72, unknown 19.9
2583 Male, age 75, right hemisphere 19.5
2409 Female, age 72, unknown 15.8
Superior colliculus
nTPM: 24.8
1995 Male, age 72, unknown 35.9
2587 Male, age 74, left hemisphere 31.3
1913 Female, age 42, unknown 31.1
1839 Male, age 51, unknown 23.8
2668 Female, age 75, unknown 23.2
2664 Male, age 75, both hemispheres 22.1
2261 Male, age 18, unknown 21.3
1796 Male, age 53, unknown 20.3
1895 Male, age 76, right hemisphere 20.1
2087 Female, age 72, unknown 18.4
Ventral tegmental area
nTPM: 23.7
2021 Male, age 53, unknown 27.2
2223 Female, age 72, unknown 25.5
1915 Female, age 42, unknown 22.8
2410 Female, age 72, unknown 22.5
2218 Male, age 76, both hemispheres 22.3
1942 Male, age 51, unknown 22.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 62.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 62.4
Samples: 139

Max nTPM: 117.6
Min nTPM: 23.0
Std nTPM: 18.8
Median nTPM: 60.2
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 117.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 112.6
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 107.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 105.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 102.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 102.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 99.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 95.6
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 95.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 94.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 94.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.7
FF:10158-103A5 76 years, female 26.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 52.1
Samples: 4

Max nTPM: 58.8
Min nTPM: 46.4
Sample A Female 58.8
Sample B Female 46.4
Sample C Male 48.0
Sample D Male 55.3
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 97.2
Min nTPM: 31.4
Sample A Female 97.2
Sample B Female 49.9
Sample C Male 39.4
Sample D Male 31.4
Periaqueductal gray
nTPM: 54.9
Samples: 3

Max nTPM: 61.2
Min nTPM: 46.3
Sample B Female 46.3
Sample C Male 61.2
Sample D Male 57.1
Superior colliculi
nTPM: 46.6
Samples: 4

Max nTPM: 49.4
Min nTPM: 43.3
Sample A Female 49.4
Sample B Female 45.1
Sample C Male 43.3
Sample D Male 48.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.1
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.7
Sample A Male 2.7
Sample B Male 2.0
Sample C Female 2.0
Sample D Female 1.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.1
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 2.1
Midbrain
Expression energy: 2.1
71489780 Antisense, RP_050512_04_B06, Mouse strain C57BL/6J (56 days, male) 2.1

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