HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.0 nTPM
HPA Brain:42.2 nTPM
GTEx:9.0 nTPM
FANTOM5:89.6 Scaled Tags Per Million
Pig:16.1 nTPM
Mouse:1.4 nTPM
Allen mouse:0.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 42.2
Sample id Sample description nTPM
Hippocampus
nTPM: 26.1
2529 Female, age 94, left hemisphere 47.4
2621 Female, age 67, right hemisphere 29.3
1911 Female, age 85, right hemisphere 27.3
1855 Male, age 76, left hemisphere 19.3
2148 Female, age 91, left hemisphere 18.8
1898 Male, age 80, left hemisphere 14.6
Dentate gyrus
nTPM: 30.7
2530 Female, age 94, left hemisphere 56.8
2010 Male, age 76, both hemispheres 33.7
2246 Female, age 85, both hemispheres 27.1
2531 Female, age 67, both hemispheres 26.7
2528 Male, age 74, both hemispheres 26.3
1927 Female, age 91, both hemispheres 13.3
Entorhinal gyrus
nTPM: 30.7
2117 Female, age 91, right hemisphere 47.0
2764 Male, age 80, right hemisphere 35.6
2686 Male, age 75, right hemisphere 34.2
2613 Female, age 94, left hemisphere 29.0
1787 Male, age 76, left hemisphere 20.6
1938 Female, age 85, left hemisphere 17.8
Hippocampus, CA1
nTPM: 20.2
2527 Male, age 74, both hemispheres 31.2
2082 Female, age 91, right hemisphere 24.7
1873 Female, age 85, both hemispheres 18.6
2749 Male, age 80, left hemisphere 15.7
2045 Male, age 76, both hemispheres 10.6
Hippocampus, CA2
nTPM: 25.2
2437 Female, age 94, left hemisphere 37.0
1963 Male, age 80, left hemisphere 26.4
2249 Male, age 74, both hemispheres 25.1
1940 Female, age 85, left hemisphere 24.6
2113 Female, age 91, right hemisphere 24.4
1892 Male, age 76, both hemispheres 13.6
Hippocampus, CA3
nTPM: 18.6
1891 Female, age 85, both hemispheres 39.1
1867 Male, age 76, both hemispheres 22.4
2436 Male, age 74, both hemispheres 16.8
2861 Female, age 67, both hemispheres 11.7
2137 Male, age 80, left hemisphere 11.2
2620 Female, age 94, left hemisphere 10.4
Parahippocampal cortex
nTPM: 29.6
2692 Male, age 74, both hemispheres 46.3
2532 Female, age 72, left hemisphere 44.4
2245 Female, age 91, both hemispheres 40.7
1990 Female, age 91, right hemisphere 30.2
2018 Male, age 76, both hemispheres 25.6
2693 Female, age 94, both hemispheres 24.9
1933 Female, age 85, both hemispheres 23.0
1850 Male, age 80, both hemispheres 22.8
2622 Female, age 67, right hemisphere 19.4
2250 Female, age 67, right hemisphere 18.3
Perirhinal gyrus
nTPM: 19.7
2521 Female, age 94, right hemisphere 34.1
1794 Male, age 80, right hemisphere 17.4
2848 Male, age 76, right hemisphere 17.3
1847 Female, age 91, left hemisphere 14.8
1841 Female, age 85, right hemisphere 14.7
Subiculum
nTPM: 42.2
2438 Female, age 94, left hemisphere 64.9
2042 Male, age 76, both hemispheres 54.7
1901 Male, age 80, both hemispheres 41.6
2619 Male, age 74, both hemispheres 36.6
1977 Female, age 85, both hemispheres 35.0
2729 Female, age 91, right hemisphere 20.3

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 9.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 9.0
Samples: 197

Max nTPM: 38.2
Min nTPM: 1.5
Std nTPM: 6.0
Median nTPM: 7.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 38.2
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 34.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 31.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 28.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 23.5
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 21.9
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 21.9
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 19.9
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 19.6
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 19.4
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 19.2
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 89.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 89.6
FF:10153-102I9 76 years, female 99.3
FF:10169-103B7 60 years, female 79.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 16.1
Pig sample Sample description nTPM
Subiculum
nTPM: 9.7
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.2
Sample A Female 8.7
Sample B Female 12.3
Sample C Male 8.2
Sample D Male 9.7
Dorsal hippocampus
nTPM: 16.1
Samples: 4

Max nTPM: 24.1
Min nTPM: 6.5
Sample A Female 21.0
Sample B Female 12.7
Sample C Male 24.1
Sample D Male 6.5
Entorhinal cortex
nTPM: 8.2
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.1
Sample A Female 6.4
Sample B Female 9.2
Sample C Male 6.1
Sample D Male 11.0
Ventral hippocampus
nTPM: 12.4
Samples: 4

Max nTPM: 16.3
Min nTPM: 9.2
Sample A Female 13.2
Sample B Female 9.2
Sample C Male 10.7
Sample D Male 16.3

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 1.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 1.0
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.8
Sample A Male 1.4
Sample B Male 1.0
Sample C Female 0.9
Sample D Female 0.8
Hippocampal formation
nTPM: 1.4
Samples: 4

Max nTPM: 1.8
Min nTPM: 1.0
Sample A Male 1.0
Sample B Male 1.4
Sample C Female 1.8
Sample D Female 1.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.7
75990533 Antisense, RP_060608_01_D03, Mouse strain C57BL/6J (56 days, male) 0.7

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