MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.1 nTPM
HPA Brain:8.0 nTPM
GTEx:7.1 nTPM
FANTOM5:17.0 Scaled Tags Per Million
Pig:8.0 nTPM
Mouse:8.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 8.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.7
1870 Female, age 42, unknown 6.8
2666 Male, age 74, left hemisphere 5.1
2019 Male, age 18, unknown 4.6
1827 Male, age 72, unknown 4.1
1830 Male, age 51, unknown 4.1
2828 Female, age 72, unknown 4.1
2411 Female, age 72, unknown 2.6
1833 Male, age 53, unknown 2.3
2586 Male, age 75, left hemisphere 2.1
2219 Male, age 76, both hemispheres 1.6
Dorsal raphe nucleus
nTPM: 3.3
2750 Male, age 76, both hemispheres 5.0
2016 Female, age 72, unknown 4.4
2298 Female, age 72, unknown 3.3
2047 Male, age 72, unknown 2.2
1828 Male, age 53, unknown 1.4
Inferior colliculus
nTPM: 4.8
1848 Female, age 42, unknown 5.1
2849 Male, age 72, unknown 5.1
1890 Male, age 53, unknown 4.5
2097 Female, age 72, unknown 4.5
Median raphe nucleus
nTPM: 6.6
2220 Male, age 76, midline 6.6
Periaquaductal grey, anterior
nTPM: 3.9
1795 Male, age 51, unknown 5.3
1947 Male, age 18, unknown 3.2
2502 Female, age 75, unknown 3.2
Periaquaductal grey, dorsal
nTPM: 4.0
1840 Male, age 53, unknown 5.0
1831 Male, age 72, unknown 3.8
2464 Female, age 72, unknown 3.6
2850 Male, age 76, both hemispheres 3.5
Periaquaductal grey, lateral
nTPM: 3.3
2053 Male, age 18, unknown 3.4
2140 Male, age 76, both hemispheres 3.3
2272 Male, age 74, both hemispheres 3.0
Pretectal area
nTPM: 4.8
1817 Female, age 42, unknown 9.4
2224 Female, age 72, unknown 8.7
2825 Male, age 18, unknown 6.3
2007 Male, age 72, unknown 6.1
2316 Male, age 76, right hemisphere 4.5
1815 Male, age 53, unknown 4.0
1816 Male, age 51, unknown 3.3
2667 Female, age 75, unknown 3.3
1944 Female, age 72, unknown 3.1
2407 Male, age 75, both hemispheres 2.4
2273 Male, age 74, both hemispheres 2.0
Red nucleus
nTPM: 3.7
2769 Male, age 72, unknown 5.4
2785 Male, age 18, unknown 4.8
2227 Male, age 72, unknown 4.4
1954 Female, age 42, unknown 4.3
1821 Female, age 72, unknown 4.1
2584 Male, age 75, left hemisphere 4.0
2588 Male, age 74, left hemisphere 3.9
2823 Male, age 76, right hemisphere 3.6
1865 Male, age 51, unknown 3.2
2503 Female, age 72, unknown 2.6
2725 Female, age 75, unknown 2.6
1904 Male, age 53, unknown 1.7
Substantia nigra
nTPM: 3.6
2665 Male, age 74, both hemispheres 9.4
1941 Male, age 53, unknown 4.7
1889 Female, age 72, unknown 4.2
2590 Female, age 75, unknown 3.8
1851 Male, age 51, unknown 3.2
2409 Female, age 72, unknown 3.1
2583 Male, age 75, right hemisphere 3.1
1916 Female, age 42, unknown 1.9
2241 Male, age 72, unknown 1.6
2699 Male, age 18, unknown 1.0
Superior colliculus
nTPM: 3.8
2668 Female, age 75, unknown 6.5
1839 Male, age 51, unknown 4.5
1895 Male, age 76, right hemisphere 4.2
2261 Male, age 18, unknown 4.1
2087 Female, age 72, unknown 3.8
2587 Male, age 74, left hemisphere 3.6
1913 Female, age 42, unknown 3.5
1796 Male, age 53, unknown 3.4
1995 Male, age 72, unknown 2.7
2664 Male, age 75, both hemispheres 1.7
Ventral tegmental area
nTPM: 8.0
2021 Male, age 53, unknown 20.1
1915 Female, age 42, unknown 11.3
1942 Male, age 51, unknown 4.8
2218 Male, age 76, both hemispheres 4.7
2223 Female, age 72, unknown 3.9
2410 Female, age 72, unknown 3.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.1
Samples: 139

Max nTPM: 74.2
Min nTPM: 0.0
Std nTPM: 10.6
Median nTPM: 3.0
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 74.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 45.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.3
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 40.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 37.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 37.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 31.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 28.9
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 23.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 20.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 19.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 8.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.7
Samples: 4

Max nTPM: 11.0
Min nTPM: 3.0
Sample A Female 4.9
Sample B Female 11.0
Sample C Male 3.0
Sample D Male 3.9
Midbrain
nTPM: 3.2
Samples: 4

Max nTPM: 4.1
Min nTPM: 2.0
Sample A Female 3.9
Sample B Female 4.1
Sample C Male 2.7
Sample D Male 2.0
Periaqueductal gray
nTPM: 2.0
Samples: 3

Max nTPM: 2.1
Min nTPM: 1.9
Sample B Female 2.1
Sample C Male 2.1
Sample D Male 1.9
Superior colliculi
nTPM: 8.0
Samples: 4

Max nTPM: 19.0
Min nTPM: 1.7
Sample A Female 8.1
Sample B Female 19.0
Sample C Male 1.7
Sample D Male 3.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 8.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.6
Samples: 4

Max nTPM: 9.3
Min nTPM: 7.7
Sample A Male 7.7
Sample B Male 8.3
Sample C Female 9.3
Sample D Female 8.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
74272920 Antisense, RP_050921_03_C05, Mouse strain C57BL/6J (56 days, male) 0.2
79912577 Antisense, RP_071204_04_E04, Mouse strain C57BL/6J (56 days, male) 0.2

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