MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:23.0 nTPM
HPA Brain:32.4 nTPM
GTEx:23.0 nTPM
FANTOM5:91.5 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:23.8 nTPM
Allen mouse:1.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.6
2666 Male, age 74, left hemisphere 27.5
1827 Male, age 72, unknown 25.2
1870 Female, age 42, unknown 24.9
2219 Male, age 76, both hemispheres 23.4
2019 Male, age 18, unknown 22.7
2828 Female, age 72, unknown 21.1
2411 Female, age 72, unknown 20.9
1830 Male, age 51, unknown 18.5
1833 Male, age 53, unknown 18.3
2586 Male, age 75, left hemisphere 13.9
Dorsal raphe nucleus
nTPM: 19.8
2750 Male, age 76, both hemispheres 30.4
2298 Female, age 72, unknown 24.0
2047 Male, age 72, unknown 17.8
1828 Male, age 53, unknown 14.9
2016 Female, age 72, unknown 11.9
Inferior colliculus
nTPM: 16.7
2097 Female, age 72, unknown 17.6
2849 Male, age 72, unknown 16.9
1848 Female, age 42, unknown 16.6
1890 Male, age 53, unknown 15.5
Median raphe nucleus
nTPM: 32.4
2220 Male, age 76, midline 32.4
Periaquaductal grey, anterior
nTPM: 26.5
1947 Male, age 18, unknown 31.6
1795 Male, age 51, unknown 26.1
2502 Female, age 75, unknown 21.8
Periaquaductal grey, dorsal
nTPM: 18.0
1831 Male, age 72, unknown 20.2
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 17.5
2464 Female, age 72, unknown 14.7
Periaquaductal grey, lateral
nTPM: 17.2
2272 Male, age 74, both hemispheres 20.3
2053 Male, age 18, unknown 15.9
2140 Male, age 76, both hemispheres 15.4
Pretectal area
nTPM: 26.7
1816 Male, age 51, unknown 38.3
1815 Male, age 53, unknown 37.9
1817 Female, age 42, unknown 37.9
2007 Male, age 72, unknown 36.5
1944 Female, age 72, unknown 36.4
2224 Female, age 72, unknown 22.2
2825 Male, age 18, unknown 17.7
2407 Male, age 75, both hemispheres 17.5
2667 Female, age 75, unknown 17.3
2316 Male, age 76, right hemisphere 16.7
2273 Male, age 74, both hemispheres 15.6
Red nucleus
nTPM: 19.1
2785 Male, age 18, unknown 24.3
1865 Male, age 51, unknown 21.0
1904 Male, age 53, unknown 21.0
2584 Male, age 75, left hemisphere 21.0
2503 Female, age 72, unknown 20.1
2588 Male, age 74, left hemisphere 19.7
1821 Female, age 72, unknown 19.6
2725 Female, age 75, unknown 19.0
1954 Female, age 42, unknown 17.4
2823 Male, age 76, right hemisphere 16.0
2227 Male, age 72, unknown 15.4
2769 Male, age 72, unknown 14.6
Substantia nigra
nTPM: 23.7
1889 Female, age 72, unknown 32.5
2665 Male, age 74, both hemispheres 27.9
2590 Female, age 75, unknown 27.5
1916 Female, age 42, unknown 25.2
1851 Male, age 51, unknown 24.4
2583 Male, age 75, right hemisphere 21.5
2409 Female, age 72, unknown 21.1
2241 Male, age 72, unknown 20.9
1941 Male, age 53, unknown 18.3
2699 Male, age 18, unknown 17.8
Superior colliculus
nTPM: 23.8
2668 Female, age 75, unknown 33.5
1796 Male, age 53, unknown 29.5
2261 Male, age 18, unknown 27.5
2087 Female, age 72, unknown 26.8
1913 Female, age 42, unknown 25.9
2587 Male, age 74, left hemisphere 25.9
1995 Male, age 72, unknown 21.5
1895 Male, age 76, right hemisphere 17.8
1839 Male, age 51, unknown 15.8
2664 Male, age 75, both hemispheres 14.2
Ventral tegmental area
nTPM: 22.6
2218 Male, age 76, both hemispheres 28.4
2410 Female, age 72, unknown 22.8
2223 Female, age 72, unknown 21.3
1915 Female, age 42, unknown 21.1
1942 Male, age 51, unknown 21.1
2021 Male, age 53, unknown 21.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 23.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 23.0
Samples: 139

Max nTPM: 52.8
Min nTPM: 5.1
Std nTPM: 7.5
Median nTPM: 22.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 52.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 41.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 38.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 36.8
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 36.1
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 35.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 34.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.6
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 34.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 34.2
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 34.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 91.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.5
FF:10158-103A5 76 years, female 91.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 22.3
Samples: 4

Max nTPM: 33.4
Min nTPM: 15.9
Sample A Female 21.8
Sample B Female 15.9
Sample C Male 18.1
Sample D Male 33.4
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 74.9
Min nTPM: 20.6
Sample A Female 74.9
Sample B Female 21.1
Sample C Male 42.1
Sample D Male 20.6
Periaqueductal gray
nTPM: 17.1
Samples: 3

Max nTPM: 19.0
Min nTPM: 14.6
Sample B Female 19.0
Sample C Male 14.6
Sample D Male 17.6
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 42.8
Min nTPM: 20.1
Sample A Female 25.9
Sample B Female 20.1
Sample C Male 42.8
Sample D Male 33.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 23.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.8
Samples: 4

Max nTPM: 24.5
Min nTPM: 23.0
Sample A Male 23.9
Sample B Male 24.5
Sample C Female 23.7
Sample D Female 23.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
71832806 Antisense, RP_051005_03_F11, Mouse strain C57BL/6J (56 days, male) 1.0
74272906 Antisense, RP_051005_03_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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