MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:61.0 nTPM
HPA Brain:74.9 nTPM
GTEx:61.0 nTPM
FANTOM5:66.2 Scaled Tags Per Million
Pig:100.6 nTPM
Mouse:95.7 nTPM
Allen mouse:2.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.4
2219 Male, age 76, both hemispheres 70.1
1870 Female, age 42, unknown 69.2
2828 Female, age 72, unknown 64.3
1827 Male, age 72, unknown 62.5
2666 Male, age 74, left hemisphere 61.7
1833 Male, age 53, unknown 58.7
2586 Male, age 75, left hemisphere 57.5
1830 Male, age 51, unknown 53.9
2411 Female, age 72, unknown 53.6
2019 Male, age 18, unknown 52.7
Dorsal raphe nucleus
nTPM: 62.9
2298 Female, age 72, unknown 68.1
2016 Female, age 72, unknown 64.3
1828 Male, age 53, unknown 63.3
2047 Male, age 72, unknown 62.3
2750 Male, age 76, both hemispheres 56.5
Inferior colliculus
nTPM: 65.8
1848 Female, age 42, unknown 69.7
2849 Male, age 72, unknown 68.8
1890 Male, age 53, unknown 63.4
2097 Female, age 72, unknown 61.2
Median raphe nucleus
nTPM: 74.9
2220 Male, age 76, midline 74.9
Periaquaductal grey, anterior
nTPM: 59.9
1795 Male, age 51, unknown 61.3
2502 Female, age 75, unknown 60.8
1947 Male, age 18, unknown 57.6
Periaquaductal grey, dorsal
nTPM: 68.2
2850 Male, age 76, both hemispheres 81.1
1840 Male, age 53, unknown 73.4
1831 Male, age 72, unknown 66.5
2464 Female, age 72, unknown 52.0
Periaquaductal grey, lateral
nTPM: 69.9
2140 Male, age 76, both hemispheres 75.3
2272 Male, age 74, both hemispheres 67.6
2053 Male, age 18, unknown 66.7
Pretectal area
nTPM: 65.5
2224 Female, age 72, unknown 71.7
2667 Female, age 75, unknown 70.6
1816 Male, age 51, unknown 68.4
2825 Male, age 18, unknown 68.0
1817 Female, age 42, unknown 66.2
2273 Male, age 74, both hemispheres 64.9
1815 Male, age 53, unknown 64.7
1944 Female, age 72, unknown 62.7
2316 Male, age 76, right hemisphere 62.0
2407 Male, age 75, both hemispheres 61.0
2007 Male, age 72, unknown 60.5
Red nucleus
nTPM: 60.7
1821 Female, age 72, unknown 67.9
2725 Female, age 75, unknown 67.3
2503 Female, age 72, unknown 66.1
2769 Male, age 72, unknown 61.9
1954 Female, age 42, unknown 61.8
2227 Male, age 72, unknown 61.4
1865 Male, age 51, unknown 59.9
1904 Male, age 53, unknown 59.5
2823 Male, age 76, right hemisphere 59.1
2785 Male, age 18, unknown 55.7
2584 Male, age 75, left hemisphere 55.2
2588 Male, age 74, left hemisphere 52.9
Substantia nigra
nTPM: 62.8
2699 Male, age 18, unknown 75.9
1916 Female, age 42, unknown 71.5
2665 Male, age 74, both hemispheres 67.8
1851 Male, age 51, unknown 65.0
2241 Male, age 72, unknown 62.9
1889 Female, age 72, unknown 62.0
1941 Male, age 53, unknown 61.2
2590 Female, age 75, unknown 58.0
2583 Male, age 75, right hemisphere 54.5
2409 Female, age 72, unknown 49.0
Superior colliculus
nTPM: 61.0
2261 Male, age 18, unknown 65.0
1839 Male, age 51, unknown 64.2
2587 Male, age 74, left hemisphere 63.0
2664 Male, age 75, both hemispheres 63.0
2087 Female, age 72, unknown 61.9
1913 Female, age 42, unknown 61.1
1796 Male, age 53, unknown 60.8
1995 Male, age 72, unknown 59.1
1895 Male, age 76, right hemisphere 58.8
2668 Female, age 75, unknown 53.8
Ventral tegmental area
nTPM: 64.6
2218 Male, age 76, both hemispheres 72.8
1915 Female, age 42, unknown 67.9
2021 Male, age 53, unknown 65.4
2223 Female, age 72, unknown 63.7
1942 Male, age 51, unknown 61.7
2410 Female, age 72, unknown 55.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 61.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 61.0
Samples: 139

Max nTPM: 84.5
Min nTPM: 47.7
Std nTPM: 6.1
Median nTPM: 59.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 84.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 76.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 75.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 73.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 72.8
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 72.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 71.7
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 71.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 71.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 71.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 66.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 66.2
FF:10158-103A5 76 years, female 66.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 100.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 93.6
Samples: 4

Max nTPM: 96.9
Min nTPM: 90.7
Sample A Female 96.9
Sample B Female 91.6
Sample C Male 90.7
Sample D Male 95.2
Midbrain
nTPM: 100.6
Samples: 4

Max nTPM: 129.8
Min nTPM: 88.0
Sample A Female 129.8
Sample B Female 91.9
Sample C Male 88.0
Sample D Male 92.7
Periaqueductal gray
nTPM: 90.9
Samples: 3

Max nTPM: 93.2
Min nTPM: 86.6
Sample B Female 93.2
Sample C Male 92.9
Sample D Male 86.6
Superior colliculi
nTPM: 100.0
Samples: 4

Max nTPM: 105.5
Min nTPM: 93.3
Sample A Female 101.9
Sample B Female 105.5
Sample C Male 93.3
Sample D Male 99.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 95.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 95.7
Samples: 4

Max nTPM: 100.1
Min nTPM: 93.8
Sample A Male 94.4
Sample B Male 94.5
Sample C Female 100.1
Sample D Female 93.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.3
68443166 Antisense, RP_050111_01_E03, Mouse strain C57BL/6J (56 days, male) 2.3

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