MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:32.0 nTPM
HPA Brain:66.8 nTPM
GTEx:32.0 nTPM
FANTOM5:34.6 Scaled Tags Per Million
Pig:42.4 nTPM
Mouse:34.0 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 66.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.0
2586 Male, age 75, left hemisphere 75.0
2666 Male, age 74, left hemisphere 71.7
1827 Male, age 72, unknown 62.3
2019 Male, age 18, unknown 60.4
2828 Female, age 72, unknown 60.3
2411 Female, age 72, unknown 57.1
1870 Female, age 42, unknown 55.0
2219 Male, age 76, both hemispheres 54.2
1833 Male, age 53, unknown 53.2
1830 Male, age 51, unknown 50.3
Dorsal raphe nucleus
nTPM: 58.7
2047 Male, age 72, unknown 68.9
1828 Male, age 53, unknown 59.3
2298 Female, age 72, unknown 58.2
2750 Male, age 76, both hemispheres 54.9
2016 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 53.1
1890 Male, age 53, unknown 55.2
1848 Female, age 42, unknown 55.1
2849 Male, age 72, unknown 53.7
2097 Female, age 72, unknown 48.3
Median raphe nucleus
nTPM: 61.1
2220 Male, age 76, midline 61.1
Periaquaductal grey, anterior
nTPM: 60.9
1795 Male, age 51, unknown 65.4
2502 Female, age 75, unknown 60.6
1947 Male, age 18, unknown 56.7
Periaquaductal grey, dorsal
nTPM: 51.2
1831 Male, age 72, unknown 55.6
1840 Male, age 53, unknown 53.6
2464 Female, age 72, unknown 49.2
2850 Male, age 76, both hemispheres 46.2
Periaquaductal grey, lateral
nTPM: 46.6
2053 Male, age 18, unknown 57.6
2272 Male, age 74, both hemispheres 42.0
2140 Male, age 76, both hemispheres 40.3
Pretectal area
nTPM: 60.7
1816 Male, age 51, unknown 76.8
1944 Female, age 72, unknown 73.7
2007 Male, age 72, unknown 71.8
1817 Female, age 42, unknown 67.9
1815 Male, age 53, unknown 62.9
2407 Male, age 75, both hemispheres 60.6
2667 Female, age 75, unknown 56.6
2224 Female, age 72, unknown 54.5
2825 Male, age 18, unknown 51.5
2273 Male, age 74, both hemispheres 45.8
2316 Male, age 76, right hemisphere 45.1
Red nucleus
nTPM: 56.7
2588 Male, age 74, left hemisphere 67.0
2503 Female, age 72, unknown 65.5
2725 Female, age 75, unknown 63.1
2584 Male, age 75, left hemisphere 62.6
1821 Female, age 72, unknown 59.4
2785 Male, age 18, unknown 59.2
2769 Male, age 72, unknown 52.3
1904 Male, age 53, unknown 52.2
2823 Male, age 76, right hemisphere 51.1
2227 Male, age 72, unknown 51.0
1954 Female, age 42, unknown 49.4
1865 Male, age 51, unknown 47.4
Substantia nigra
nTPM: 66.8
1916 Female, age 42, unknown 79.8
2665 Male, age 74, both hemispheres 77.9
1851 Male, age 51, unknown 71.7
1889 Female, age 72, unknown 69.2
1941 Male, age 53, unknown 68.2
2583 Male, age 75, right hemisphere 62.6
2409 Female, age 72, unknown 61.3
2590 Female, age 75, unknown 61.3
2699 Male, age 18, unknown 61.1
2241 Male, age 72, unknown 55.3
Superior colliculus
nTPM: 59.5
2664 Male, age 75, both hemispheres 73.4
2087 Female, age 72, unknown 63.4
1796 Male, age 53, unknown 63.1
2668 Female, age 75, unknown 60.7
1839 Male, age 51, unknown 60.4
2261 Male, age 18, unknown 60.0
1913 Female, age 42, unknown 55.3
2587 Male, age 74, left hemisphere 55.0
1895 Male, age 76, right hemisphere 52.4
1995 Male, age 72, unknown 51.6
Ventral tegmental area
nTPM: 60.1
2410 Female, age 72, unknown 72.0
2218 Male, age 76, both hemispheres 62.0
1915 Female, age 42, unknown 61.8
2021 Male, age 53, unknown 56.5
1942 Male, age 51, unknown 55.2
2223 Female, age 72, unknown 53.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.0
Samples: 139

Max nTPM: 53.4
Min nTPM: 20.3
Std nTPM: 5.9
Median nTPM: 30.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 53.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 48.5
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 48.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 48.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 47.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 44.6
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 43.3
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 42.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 41.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 41.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 40.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 34.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 34.6
FF:10158-103A5 76 years, female 34.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 42.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 41.2
Samples: 4

Max nTPM: 49.9
Min nTPM: 34.3
Sample A Female 49.9
Sample B Female 36.8
Sample C Male 43.7
Sample D Male 34.3
Midbrain
nTPM: 42.1
Samples: 4

Max nTPM: 46.2
Min nTPM: 39.4
Sample A Female 42.3
Sample B Female 39.4
Sample C Male 46.2
Sample D Male 40.6
Periaqueductal gray
nTPM: 36.6
Samples: 3

Max nTPM: 39.0
Min nTPM: 32.7
Sample B Female 38.0
Sample C Male 39.0
Sample D Male 32.7
Superior colliculi
nTPM: 42.4
Samples: 4

Max nTPM: 47.3
Min nTPM: 34.5
Sample A Female 45.7
Sample B Female 34.5
Sample C Male 47.3
Sample D Male 42.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.1
Samples: 4

Max nTPM: 35.4
Min nTPM: 31.9
Sample A Male 33.7
Sample B Male 35.4
Sample C Female 31.9
Sample D Female 35.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68269270 Antisense, RP_041208_02_A04, Mouse strain C57BL/6J (56 days, male) 0.8

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