MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:33.5 nTPM
HPA Brain:143.0 nTPM
GTEx:33.5 nTPM
FANTOM5:132.0 Scaled Tags Per Million
Pig:49.5 nTPM
Mouse:22.1 nTPM
Allen mouse:4.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 143.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 129.0
2666 Male, age 74, left hemisphere 158.6
2019 Male, age 18, unknown 157.8
2586 Male, age 75, left hemisphere 149.7
2411 Female, age 72, unknown 127.8
2828 Female, age 72, unknown 127.0
1830 Male, age 51, unknown 126.9
1833 Male, age 53, unknown 125.0
1827 Male, age 72, unknown 121.3
1870 Female, age 42, unknown 115.9
2219 Male, age 76, both hemispheres 80.0
Dorsal raphe nucleus
nTPM: 111.3
2750 Male, age 76, both hemispheres 126.6
1828 Male, age 53, unknown 116.4
2016 Female, age 72, unknown 111.4
2047 Male, age 72, unknown 107.4
2298 Female, age 72, unknown 94.7
Inferior colliculus
nTPM: 119.0
1848 Female, age 42, unknown 128.2
2849 Male, age 72, unknown 122.7
1890 Male, age 53, unknown 119.7
2097 Female, age 72, unknown 105.4
Median raphe nucleus
nTPM: 96.9
2220 Male, age 76, midline 96.9
Periaquaductal grey, anterior
nTPM: 107.7
2502 Female, age 75, unknown 120.4
1795 Male, age 51, unknown 102.1
1947 Male, age 18, unknown 100.6
Periaquaductal grey, dorsal
nTPM: 104.4
2464 Female, age 72, unknown 118.8
1831 Male, age 72, unknown 106.8
1840 Male, age 53, unknown 100.8
2850 Male, age 76, both hemispheres 91.3
Periaquaductal grey, lateral
nTPM: 101.6
2140 Male, age 76, both hemispheres 104.8
2272 Male, age 74, both hemispheres 100.8
2053 Male, age 18, unknown 99.1
Pretectal area
nTPM: 121.8
1817 Female, age 42, unknown 153.8
2007 Male, age 72, unknown 146.7
1815 Male, age 53, unknown 138.9
1816 Male, age 51, unknown 133.7
1944 Female, age 72, unknown 131.7
2407 Male, age 75, both hemispheres 123.8
2316 Male, age 76, right hemisphere 112.0
2825 Male, age 18, unknown 109.3
2667 Female, age 75, unknown 107.8
2224 Female, age 72, unknown 92.5
2273 Male, age 74, both hemispheres 89.1
Red nucleus
nTPM: 143.0
2588 Male, age 74, left hemisphere 177.8
2785 Male, age 18, unknown 151.9
1821 Female, age 72, unknown 148.1
2503 Female, age 72, unknown 144.0
1865 Male, age 51, unknown 142.3
2823 Male, age 76, right hemisphere 140.7
2769 Male, age 72, unknown 140.0
1904 Male, age 53, unknown 138.7
2227 Male, age 72, unknown 136.7
1954 Female, age 42, unknown 135.0
2584 Male, age 75, left hemisphere 134.9
2725 Female, age 75, unknown 125.8
Substantia nigra
nTPM: 134.1
2665 Male, age 74, both hemispheres 178.0
2583 Male, age 75, right hemisphere 142.2
1851 Male, age 51, unknown 136.3
2590 Female, age 75, unknown 133.9
2409 Female, age 72, unknown 132.4
1889 Female, age 72, unknown 129.3
2699 Male, age 18, unknown 126.9
1916 Female, age 42, unknown 126.0
1941 Male, age 53, unknown 122.0
2241 Male, age 72, unknown 113.9
Superior colliculus
nTPM: 126.0
2668 Female, age 75, unknown 140.7
2587 Male, age 74, left hemisphere 132.7
1995 Male, age 72, unknown 129.7
2087 Female, age 72, unknown 129.4
1913 Female, age 42, unknown 125.1
2664 Male, age 75, both hemispheres 123.9
1839 Male, age 51, unknown 123.0
1796 Male, age 53, unknown 122.0
2261 Male, age 18, unknown 119.6
1895 Male, age 76, right hemisphere 113.7
Ventral tegmental area
nTPM: 114.6
2410 Female, age 72, unknown 126.2
2223 Female, age 72, unknown 121.1
2021 Male, age 53, unknown 113.0
1915 Female, age 42, unknown 112.7
1942 Male, age 51, unknown 108.0
2218 Male, age 76, both hemispheres 106.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 33.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 33.5
Samples: 139

Max nTPM: 78.1
Min nTPM: 4.6
Std nTPM: 11.1
Median nTPM: 32.0
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 78.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 67.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 65.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 60.3
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 58.5
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 57.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 52.3
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 49.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 49.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 48.2
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 48.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.0
FF:10158-103A5 76 years, female 132.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 49.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 49.5
Samples: 4

Max nTPM: 57.2
Min nTPM: 45.3
Sample A Female 45.3
Sample B Female 46.7
Sample C Male 48.7
Sample D Male 57.2
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 55.0
Min nTPM: 37.9
Sample A Female 52.5
Sample B Female 50.0
Sample C Male 55.0
Sample D Male 37.9
Periaqueductal gray
nTPM: 43.0
Samples: 3

Max nTPM: 45.9
Min nTPM: 38.4
Sample B Female 45.9
Sample C Male 44.7
Sample D Male 38.4
Superior colliculi
nTPM: 46.0
Samples: 4

Max nTPM: 51.6
Min nTPM: 39.5
Sample A Female 43.5
Sample B Female 39.5
Sample C Male 51.6
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 22.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.1
Samples: 4

Max nTPM: 22.8
Min nTPM: 21.1
Sample A Male 21.7
Sample B Male 21.1
Sample C Female 22.8
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.7
74579951 Antisense, RP_060215_01_E04, Mouse strain C57BL/6J (56 days, male) 4.7

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