MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.3 nTPM
HPA Brain:51.5 nTPM
GTEx:13.3 nTPM
FANTOM5:4.2 Scaled Tags Per Million
Pig:23.9 nTPM
Mouse:1.1 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 3.6
2219 Male, age 76, both hemispheres 17.4
1830 Male, age 51, unknown 3.9
1870 Female, age 42, unknown 3.3
1833 Male, age 53, unknown 2.8
2828 Female, age 72, unknown 2.1
2666 Male, age 74, left hemisphere 1.9
2586 Male, age 75, left hemisphere 1.6
2411 Female, age 72, unknown 1.4
2019 Male, age 18, unknown 1.3
1827 Male, age 72, unknown 0.5
Dorsal raphe nucleus
nTPM: 2.1
1828 Male, age 53, unknown 3.6
2016 Female, age 72, unknown 2.9
2047 Male, age 72, unknown 1.7
2298 Female, age 72, unknown 1.1
2750 Male, age 76, both hemispheres 1.1
Inferior colliculus
nTPM: 2.1
1890 Male, age 53, unknown 3.0
1848 Female, age 42, unknown 1.9
2849 Male, age 72, unknown 1.9
2097 Female, age 72, unknown 1.5
Median raphe nucleus
nTPM: 1.1
2220 Male, age 76, midline 1.1
Periaquaductal grey, anterior
nTPM: 6.1
1947 Male, age 18, unknown 10.1
2502 Female, age 75, unknown 5.7
1795 Male, age 51, unknown 2.5
Periaquaductal grey, dorsal
nTPM: 2.8
1840 Male, age 53, unknown 4.0
1831 Male, age 72, unknown 3.1
2850 Male, age 76, both hemispheres 2.8
2464 Female, age 72, unknown 1.5
Periaquaductal grey, lateral
nTPM: 1.1
2053 Male, age 18, unknown 1.4
2272 Male, age 74, both hemispheres 1.2
2140 Male, age 76, both hemispheres 0.8
Pretectal area
nTPM: 4.0
2273 Male, age 74, both hemispheres 18.0
2407 Male, age 75, both hemispheres 8.8
2224 Female, age 72, unknown 7.2
2825 Male, age 18, unknown 3.2
2667 Female, age 75, unknown 1.9
1817 Female, age 42, unknown 1.3
1944 Female, age 72, unknown 1.3
2316 Male, age 76, right hemisphere 0.7
1816 Male, age 51, unknown 0.4
1815 Male, age 53, unknown 0.3
2007 Male, age 72, unknown 0.3
Red nucleus
nTPM: 2.8
2725 Female, age 75, unknown 9.6
2584 Male, age 75, left hemisphere 4.9
1865 Male, age 51, unknown 3.5
2588 Male, age 74, left hemisphere 2.6
1821 Female, age 72, unknown 2.1
1904 Male, age 53, unknown 1.9
1954 Female, age 42, unknown 1.9
2769 Male, age 72, unknown 1.9
2785 Male, age 18, unknown 1.4
2823 Male, age 76, right hemisphere 1.4
2227 Male, age 72, unknown 1.2
2503 Female, age 72, unknown 1.2
Substantia nigra
nTPM: 51.5
1916 Female, age 42, unknown 124.2
1851 Male, age 51, unknown 109.1
2699 Male, age 18, unknown 88.8
2241 Male, age 72, unknown 79.2
2409 Female, age 72, unknown 36.0
1941 Male, age 53, unknown 26.8
2665 Male, age 74, both hemispheres 22.9
1889 Female, age 72, unknown 10.9
2583 Male, age 75, right hemisphere 9.4
2590 Female, age 75, unknown 7.9
Superior colliculus
nTPM: 6.5
1995 Male, age 72, unknown 23.2
2664 Male, age 75, both hemispheres 10.2
1913 Female, age 42, unknown 8.2
2668 Female, age 75, unknown 6.3
1796 Male, age 53, unknown 5.7
2587 Male, age 74, left hemisphere 4.5
1839 Male, age 51, unknown 3.7
2087 Female, age 72, unknown 1.1
1895 Male, age 76, right hemisphere 1.0
2261 Male, age 18, unknown 0.7
Ventral tegmental area
nTPM: 30.5
1915 Female, age 42, unknown 57.9
2218 Male, age 76, both hemispheres 36.7
2410 Female, age 72, unknown 30.2
2021 Male, age 53, unknown 25.7
1942 Male, age 51, unknown 22.0
2223 Female, age 72, unknown 10.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 13.3
GTEx sample id Sample description nTPM
2.86.218.60.341.50102030405060708090
Brain - Substantia nigra
Average nTPM: 13.3
Samples: 139

Max nTPM: 97.2
Min nTPM: 0.3
Std nTPM: 15.9
Median nTPM: 6.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 97.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 85.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 53.4
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 49.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 46.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 45.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 45.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 44.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 44.2
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 41.5
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 40.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 4.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 4.2
FF:10158-103A5 76 years, female 4.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 23.9
Pig sample Sample description nTPM
15.724.933.01.044.90510152025303540
 		Substantia nigra
nTPM: 23.9
Samples: 4

Max nTPM: 44.9
Min nTPM: 1.0
Sample A Female 29.1
Sample B Female 20.6
Sample C Male 44.9
Sample D Male 1.0
0.92.55.90.811.701234567891011
 		Midbrain
nTPM: 4.4
Samples: 4

Max nTPM: 11.7
Min nTPM: 0.8
Sample A Female 4.0
Sample B Female 11.7
Sample C Male 0.8
Sample D Male 1.0
1.92.12.41.72.70.00.20.40.60.81.01.21.41.61.82.02.22.42.6
 		Periaqueductal gray
nTPM: 2.2
Samples: 3

Max nTPM: 2.7
Min nTPM: 1.7
Sample B Female 1.7
Sample C Male 2.1
Sample D Male 2.7
1.15.513.00.922.40246810121416182022
 		Superior colliculi
nTPM: 8.6
Samples: 4

Max nTPM: 22.4
Min nTPM: 0.9
Sample A Female 9.9
Sample B Female 22.4
Sample C Male 0.9
Sample D Male 1.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 1.1
Mouse sample Sample description nTPM
1.01.11.30.91.40.00.10.20.30.40.50.60.70.80.91.01.11.21.31.4
 		Midbrain
nTPM: 1.1
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.9
Sample A Male 0.9
Sample B Male 1.2
Sample C Female 1.4
Sample D Female 1.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68667366 Antisense, RP_050201_02_B06, Mouse strain C57BL/6J (56 days, male) 0.1
71016632 Antisense, RP_050725_03_B01, Mouse strain C57BL/6J (56 days, male) 0.0

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