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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
48.1
nTPM
Monaco:
26.5
nTPM
Schmiedel:
60.8
TPM
T-CELLS - Annotated protein expression
Pending normal tissue analysis
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
48.1
HPA sample
nTPM
gdT-cell nTPM: 39.8
Samples: 6
Max nTPM: 58.7
Min nTPM: 22.1
P10809_1007
22.1
P10809_1022
35.1
P10809_1041
58.7
P10809_1060
33.4
P10809_1077
50.0
P10809_1098
39.2
MAIT T-cell nTPM: 34.5
Samples: 6
Max nTPM: 43.9
Min nTPM: 21.6
P10809_1006
21.6
P10809_1024
40.6
P10809_1043
39.3
P10809_1062
43.9
P10809_1083
35.7
P10809_1097
25.8
Memory CD4 T-cell nTPM: 35.5
Samples: 6
Max nTPM: 41.6
Min nTPM: 19.8
P10809_1014
19.8
P10809_1026
40.5
P10809_1045
34.7
P10809_1064
41.6
P10809_1086
41.0
P10809_1113
35.2
Memory CD8 T-cell nTPM: 31.4
Samples: 5
Max nTPM: 36.9
Min nTPM: 22.7
P10809_1012
22.7
P10809_1027
33.1
P10809_1046
36.9
P10809_1065
34.0
P10809_1111
30.3
Naive CD4 T-cell nTPM: 48.1
Samples: 6
Max nTPM: 65.2
Min nTPM: 23.2
P10809_1015
23.2
P10809_1030
49.4
P10809_1049
65.2
P10809_1068
62.1
P10809_1085
46.2
P10809_1112
42.5
Naive CD8 T-cell nTPM: 33.5
Samples: 6
Max nTPM: 43.7
Min nTPM: 26.4
P10809_1016
26.4
P10809_1031
32.3
P10809_1050
34.4
P10809_1069
43.7
P10809_1087
31.6
P10809_1110
32.6
T-reg nTPM: 44.0
Samples: 6
Max nTPM: 70.1
Min nTPM: 21.4
P10809_1018
21.4
P10809_1037
38.4
P10809_1056
70.1
P10809_1075
52.8
P10809_1094
44.1
P10809_1106
37.1
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
26.5
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 23.7
Samples: 4
Max nTPM: 29.9
Min nTPM: 18.6
RHH5202_R3573
26.8
RHH5230_R3602
19.3
RHH5259_R3631
29.9
RHH5288_R3660
18.6
Effector memory CD8 T-cell nTPM: 15.7
Samples: 4
Max nTPM: 18.4
Min nTPM: 9.3
RHH5203_R3574
17.1
RHH5231_R3603
17.8
RHH5260_R3632
18.4
RHH5289_R3661
9.3
MAIT T-cell nTPM: 18.2
Samples: 4
Max nTPM: 24.6
Min nTPM: 10.6
RHH5233_R3605
10.6
RHH5205_R3576
16.3
RHH5262_R3634
21.3
RHH5297_R3663
24.6
Memory CD4 T-cell TFH nTPM: 23.5
Samples: 4
Max nTPM: 32.8
Min nTPM: 18.4
RHH5300_R3666
18.4
RHH5236_R3608
32.8
RHH5265_R3637
21.7
RHH5208_R3579
21.0
Memory CD4 T-cell Th1 nTPM: 22.7
Samples: 4
Max nTPM: 36.9
Min nTPM: 17.7
RHH5210_R3581
18.4
RHH5302_R3668
36.9
RHH5238_R3610
17.7
RHH5267_R3639
17.8
Memory CD4 T-cell Th1/Th17 nTPM: 16.5
Samples: 4
Max nTPM: 20.5
Min nTPM: 11.4
RHH5303_R3669
19.7
RHH5211_R3582
20.5
RHH5239_R3611
11.4
RHH5268_R3640
14.2
Memory CD4 T-cell Th17 nTPM: 25.8
Samples: 4
Max nTPM: 42.6
Min nTPM: 13.4
RHH5304_R3670
26.6
RHH5212_R3583
42.6
RHH5240_R3612
20.5
RHH5269_R3641
13.4
Memory CD4 T-cell Th2 nTPM: 17.6
Samples: 4
Max nTPM: 20.9
Min nTPM: 14.3
RHH5305_R3671
18.4
RHH5213_R3584
16.6
RHH5241_R3613
20.9
RHH5270_R3642
14.3
Naive CD4 T-cell nTPM: 22.1
Samples: 4
Max nTPM: 25.0
Min nTPM: 18.1
RHH5306_R3672
18.1
RHH5214_R3585
25.0
RHH5242_R3614
24.7
RHH5271_R3643
20.7
Naive CD8 T-cell nTPM: 18.6
Samples: 4
Max nTPM: 23.7
Min nTPM: 14.6
RHH5201_R3572
23.7
RHH5229_R3601
15.6
RHH5258_R3630
20.5
RHH5287_R3659
14.6
Non-Vd2 gdTCR nTPM: 17.4
Samples: 4
Max nTPM: 24.6
Min nTPM: 12.5
RHH5235_R3607
15.6
RHH5264_R3636
16.8
RHH5207_R3578
24.6
RHH5299_R3665
12.5
T-reg nTPM: 16.6
Samples: 4
Max nTPM: 18.4
Min nTPM: 13.7
RHH5301_R3667
18.4
RHH5237_R3609
17.8
RHH5266_R3638
16.5
RHH5209_R3580
13.7
Terminal effector memory CD4 T-cell nTPM: 15.5
Samples: 2
Max nTPM: 18.4
Min nTPM: 12.5
RHH5243_R3615
12.5
RHH5272_R3644
18.4
Terminal effector memory CD8 T-cell nTPM: 26.5
Samples: 4
Max nTPM: 47.8
Min nTPM: 9.6
RHH5232_R3604
28.0
RHH5204_R3575
47.8
RHH5261_R3633
9.6
RHH5296_R3662
20.6
Vd2 gdTCR nTPM: 21.2
Samples: 4
Max nTPM: 38.0
Min nTPM: 7.3
RHH5234_R3606
19.5
RHH5206_R3577
38.0
RHH5263_R3635
7.3
RHH5298_R3664
20.1
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
