MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:21.1 nTPM
HPA Brain:16.5 nTPM
GTEx:21.1 nTPM
FANTOM5:37.9 Scaled Tags Per Million
Pig:27.6 nTPM
Mouse:15.7 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.5
1833 Male, age 53, unknown 17.8
2411 Female, age 72, unknown 16.6
1870 Female, age 42, unknown 15.3
2019 Male, age 18, unknown 14.8
1827 Male, age 72, unknown 13.5
2219 Male, age 76, both hemispheres 12.5
2828 Female, age 72, unknown 12.2
2666 Male, age 74, left hemisphere 12.1
1830 Male, age 51, unknown 11.7
2586 Male, age 75, left hemisphere 8.5
Dorsal raphe nucleus
nTPM: 13.7
2750 Male, age 76, both hemispheres 17.3
2298 Female, age 72, unknown 14.0
1828 Male, age 53, unknown 13.5
2047 Male, age 72, unknown 12.7
2016 Female, age 72, unknown 11.3
Inferior colliculus
nTPM: 12.9
2097 Female, age 72, unknown 13.5
1848 Female, age 42, unknown 13.3
2849 Male, age 72, unknown 12.9
1890 Male, age 53, unknown 12.0
Median raphe nucleus
nTPM: 15.5
2220 Male, age 76, midline 15.5
Periaquaductal grey, anterior
nTPM: 12.5
1947 Male, age 18, unknown 14.2
2502 Female, age 75, unknown 12.0
1795 Male, age 51, unknown 11.3
Periaquaductal grey, dorsal
nTPM: 13.5
2464 Female, age 72, unknown 14.1
2850 Male, age 76, both hemispheres 13.9
1840 Male, age 53, unknown 13.1
1831 Male, age 72, unknown 12.9
Periaquaductal grey, lateral
nTPM: 11.3
2140 Male, age 76, both hemispheres 11.6
2053 Male, age 18, unknown 11.3
2272 Male, age 74, both hemispheres 11.1
Pretectal area
nTPM: 13.1
2224 Female, age 72, unknown 14.7
1944 Female, age 72, unknown 14.6
1816 Male, age 51, unknown 14.4
2007 Male, age 72, unknown 14.4
2273 Male, age 74, both hemispheres 14.1
1815 Male, age 53, unknown 13.4
2825 Male, age 18, unknown 13.1
1817 Female, age 42, unknown 12.3
2316 Male, age 76, right hemisphere 11.5
2667 Female, age 75, unknown 11.2
2407 Male, age 75, both hemispheres 10.1
Red nucleus
nTPM: 14.7
2725 Female, age 75, unknown 17.2
1821 Female, age 72, unknown 16.8
1865 Male, age 51, unknown 16.5
2588 Male, age 74, left hemisphere 15.6
2823 Male, age 76, right hemisphere 15.1
2503 Female, age 72, unknown 14.7
1954 Female, age 42, unknown 14.5
2584 Male, age 75, left hemisphere 13.8
1904 Male, age 53, unknown 13.3
2227 Male, age 72, unknown 13.0
2785 Male, age 18, unknown 13.0
2769 Male, age 72, unknown 12.4
Substantia nigra
nTPM: 16.5
2241 Male, age 72, unknown 22.8
1851 Male, age 51, unknown 18.2
1916 Female, age 42, unknown 16.2
2409 Female, age 72, unknown 16.2
2590 Female, age 75, unknown 15.9
2583 Male, age 75, right hemisphere 15.8
2665 Male, age 74, both hemispheres 15.8
2699 Male, age 18, unknown 15.5
1889 Female, age 72, unknown 15.4
1941 Male, age 53, unknown 13.7
Superior colliculus
nTPM: 12.8
2587 Male, age 74, left hemisphere 15.5
1913 Female, age 42, unknown 14.9
1895 Male, age 76, right hemisphere 14.2
1839 Male, age 51, unknown 13.2
2668 Female, age 75, unknown 13.2
2087 Female, age 72, unknown 13.1
1796 Male, age 53, unknown 12.8
1995 Male, age 72, unknown 11.9
2261 Male, age 18, unknown 11.8
2664 Male, age 75, both hemispheres 7.8
Ventral tegmental area
nTPM: 15.2
1915 Female, age 42, unknown 16.1
2218 Male, age 76, both hemispheres 16.1
2021 Male, age 53, unknown 15.9
2410 Female, age 72, unknown 15.9
2223 Female, age 72, unknown 14.2
1942 Male, age 51, unknown 13.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 21.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 21.1
Samples: 139

Max nTPM: 38.4
Min nTPM: 11.9
Std nTPM: 4.4
Median nTPM: 20.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 38.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 36.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 35.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 29.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 29.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 28.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 28.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 28.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 27.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 27.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 37.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 37.9
FF:10158-103A5 76 years, female 37.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 27.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.1
Samples: 4

Max nTPM: 31.4
Min nTPM: 20.2
Sample A Female 31.4
Sample B Female 20.2
Sample C Male 26.0
Sample D Male 22.8
Midbrain
nTPM: 27.6
Samples: 4

Max nTPM: 34.8
Min nTPM: 20.0
Sample A Female 20.0
Sample B Female 27.0
Sample C Male 28.5
Sample D Male 34.8
Periaqueductal gray
nTPM: 21.9
Samples: 3

Max nTPM: 23.3
Min nTPM: 19.1
Sample B Female 19.1
Sample C Male 23.3
Sample D Male 23.3
Superior colliculi
nTPM: 27.2
Samples: 4

Max nTPM: 31.3
Min nTPM: 18.3
Sample A Female 29.3
Sample B Female 18.3
Sample C Male 29.9
Sample D Male 31.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 15.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 15.7
Samples: 4

Max nTPM: 20.1
Min nTPM: 13.4
Sample A Male 14.8
Sample B Male 20.1
Sample C Female 14.5
Sample D Female 13.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69133617 Antisense, RP_050321_01_H10, Mouse strain C57BL/6J (56 days, male) 0.3

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