MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:40.9 nTPM
GTEx:9.5 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:20.0 nTPM
Mouse:18.6 nTPM
Allen mouse:0.8 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 35.7
2019 Male, age 18, unknown 43.3
2411 Female, age 72, unknown 40.4
1830 Male, age 51, unknown 38.9
1833 Male, age 53, unknown 38.6
2219 Male, age 76, both hemispheres 34.6
1870 Female, age 42, unknown 34.0
2586 Male, age 75, left hemisphere 34.0
2666 Male, age 74, left hemisphere 33.8
1827 Male, age 72, unknown 32.0
2828 Female, age 72, unknown 27.4
Dorsal raphe nucleus
nTPM: 27.8
2750 Male, age 76, both hemispheres 37.8
2016 Female, age 72, unknown 27.1
2047 Male, age 72, unknown 27.1
1828 Male, age 53, unknown 26.5
2298 Female, age 72, unknown 20.7
Inferior colliculus
nTPM: 28.7
2849 Male, age 72, unknown 30.5
1848 Female, age 42, unknown 28.5
1890 Male, age 53, unknown 28.1
2097 Female, age 72, unknown 27.6
Median raphe nucleus
nTPM: 29.9
2220 Male, age 76, midline 29.9
Periaquaductal grey, anterior
nTPM: 23.8
2502 Female, age 75, unknown 27.4
1947 Male, age 18, unknown 22.4
1795 Male, age 51, unknown 21.7
Periaquaductal grey, dorsal
nTPM: 24.7
2464 Female, age 72, unknown 29.0
1831 Male, age 72, unknown 25.6
1840 Male, age 53, unknown 25.4
2850 Male, age 76, both hemispheres 18.8
Periaquaductal grey, lateral
nTPM: 23.2
2053 Male, age 18, unknown 24.6
2272 Male, age 74, both hemispheres 24.5
2140 Male, age 76, both hemispheres 20.5
Pretectal area
nTPM: 29.9
1815 Male, age 53, unknown 37.6
2407 Male, age 75, both hemispheres 36.3
2007 Male, age 72, unknown 34.1
1817 Female, age 42, unknown 33.4
1944 Female, age 72, unknown 30.7
2825 Male, age 18, unknown 29.0
2316 Male, age 76, right hemisphere 28.9
1816 Male, age 51, unknown 28.5
2667 Female, age 75, unknown 24.6
2273 Male, age 74, both hemispheres 22.9
2224 Female, age 72, unknown 22.5
Red nucleus
nTPM: 40.9
2785 Male, age 18, unknown 44.8
2584 Male, age 75, left hemisphere 44.5
2503 Female, age 72, unknown 44.1
2588 Male, age 74, left hemisphere 44.0
1865 Male, age 51, unknown 43.3
1821 Female, age 72, unknown 43.1
1954 Female, age 42, unknown 42.3
1904 Male, age 53, unknown 41.9
2823 Male, age 76, right hemisphere 38.9
2227 Male, age 72, unknown 35.6
2769 Male, age 72, unknown 34.9
2725 Female, age 75, unknown 33.8
Substantia nigra
nTPM: 36.7
2241 Male, age 72, unknown 43.3
2583 Male, age 75, right hemisphere 42.1
2409 Female, age 72, unknown 40.2
2590 Female, age 75, unknown 38.2
1851 Male, age 51, unknown 37.8
1916 Female, age 42, unknown 36.3
1889 Female, age 72, unknown 35.2
2699 Male, age 18, unknown 35.2
1941 Male, age 53, unknown 30.1
2665 Male, age 74, both hemispheres 28.6
Superior colliculus
nTPM: 32.8
1913 Female, age 42, unknown 39.6
2668 Female, age 75, unknown 38.7
1895 Male, age 76, right hemisphere 38.0
2664 Male, age 75, both hemispheres 33.6
2587 Male, age 74, left hemisphere 32.7
1995 Male, age 72, unknown 31.8
1796 Male, age 53, unknown 30.3
1839 Male, age 51, unknown 29.3
2087 Female, age 72, unknown 29.1
2261 Male, age 18, unknown 25.3
Ventral tegmental area
nTPM: 34.8
2223 Female, age 72, unknown 40.0
2410 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 35.8
1915 Female, age 42, unknown 32.5
2218 Male, age 76, both hemispheres 32.2
2021 Male, age 53, unknown 32.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 19.1
Min nTPM: 3.6
Std nTPM: 3.2
Median nTPM: 8.6
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 19.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 18.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 18.5
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 18.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 18.2
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 17.7
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 17.5
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 17.1
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 15.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 14.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 14.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 41.4
FF:10158-103A5 76 years, female 41.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 20.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.7
Samples: 4

Max nTPM: 24.8
Min nTPM: 15.7
Sample A Female 19.0
Sample B Female 15.7
Sample C Male 19.4
Sample D Male 24.8
Midbrain
nTPM: 20.0
Samples: 4

Max nTPM: 22.5
Min nTPM: 17.9
Sample A Female 22.5
Sample B Female 20.3
Sample C Male 19.1
Sample D Male 17.9
Periaqueductal gray
nTPM: 17.3
Samples: 3

Max nTPM: 18.3
Min nTPM: 16.1
Sample B Female 18.3
Sample C Male 17.5
Sample D Male 16.1
Superior colliculi
nTPM: 17.5
Samples: 4

Max nTPM: 21.7
Min nTPM: 11.8
Sample A Female 19.1
Sample B Female 11.8
Sample C Male 17.3
Sample D Male 21.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 18.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 18.6
Samples: 4

Max nTPM: 20.0
Min nTPM: 16.6
Sample A Male 16.6
Sample B Male 20.0
Sample C Female 19.3
Sample D Female 18.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
69407702 Antisense, RP_050414_02_B10, Mouse strain C57BL/6J (56 days, male) 0.8

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