MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.3 nTPM
HPA Brain:11.0 nTPM
GTEx:18.3 nTPM
FANTOM5:15.4 Scaled Tags Per Million
Pig:6.6 nTPM
Mouse:32.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2586 Male, age 75, left hemisphere 16.1
2019 Male, age 18, unknown 11.8
2828 Female, age 72, unknown 11.4
1870 Female, age 42, unknown 10.9
2666 Male, age 74, left hemisphere 10.9
1833 Male, age 53, unknown 10.4
2411 Female, age 72, unknown 10.2
1827 Male, age 72, unknown 9.9
1830 Male, age 51, unknown 9.9
2219 Male, age 76, both hemispheres 8.8
Dorsal raphe nucleus
nTPM: 9.5
2016 Female, age 72, unknown 10.0
2750 Male, age 76, both hemispheres 10.0
1828 Male, age 53, unknown 9.9
2047 Male, age 72, unknown 9.2
2298 Female, age 72, unknown 8.3
Inferior colliculus
nTPM: 9.9
2849 Male, age 72, unknown 10.8
1848 Female, age 42, unknown 10.6
1890 Male, age 53, unknown 9.5
2097 Female, age 72, unknown 8.9
Median raphe nucleus
nTPM: 7.5
2220 Male, age 76, midline 7.5
Periaquaductal grey, anterior
nTPM: 10.6
1795 Male, age 51, unknown 10.7
2502 Female, age 75, unknown 10.6
1947 Male, age 18, unknown 10.4
Periaquaductal grey, dorsal
nTPM: 8.6
2464 Female, age 72, unknown 9.2
1840 Male, age 53, unknown 8.8
1831 Male, age 72, unknown 8.3
2850 Male, age 76, both hemispheres 7.8
Periaquaductal grey, lateral
nTPM: 8.7
2053 Male, age 18, unknown 8.9
2140 Male, age 76, both hemispheres 8.9
2272 Male, age 74, both hemispheres 8.4
Pretectal area
nTPM: 9.7
2407 Male, age 75, both hemispheres 12.4
2007 Male, age 72, unknown 11.3
2316 Male, age 76, right hemisphere 9.9
2667 Female, age 75, unknown 9.8
1816 Male, age 51, unknown 9.5
1944 Female, age 72, unknown 9.5
2825 Male, age 18, unknown 9.5
1817 Female, age 42, unknown 9.2
2224 Female, age 72, unknown 9.2
1815 Male, age 53, unknown 8.5
2273 Male, age 74, both hemispheres 8.4
Red nucleus
nTPM: 10.4
2584 Male, age 75, left hemisphere 12.8
2227 Male, age 72, unknown 11.8
2785 Male, age 18, unknown 11.6
2588 Male, age 74, left hemisphere 11.1
2769 Male, age 72, unknown 10.6
1865 Male, age 51, unknown 10.4
1821 Female, age 72, unknown 10.0
2503 Female, age 72, unknown 9.8
1904 Male, age 53, unknown 9.7
1954 Female, age 42, unknown 9.0
2725 Female, age 75, unknown 8.8
2823 Male, age 76, right hemisphere 8.7
Substantia nigra
nTPM: 10.0
2583 Male, age 75, right hemisphere 12.0
2665 Male, age 74, both hemispheres 11.4
1941 Male, age 53, unknown 11.0
2590 Female, age 75, unknown 10.7
1851 Male, age 51, unknown 10.2
2699 Male, age 18, unknown 10.1
1889 Female, age 72, unknown 9.1
2409 Female, age 72, unknown 8.8
1916 Female, age 42, unknown 8.6
2241 Male, age 72, unknown 7.6
Superior colliculus
nTPM: 10.6
2664 Male, age 75, both hemispheres 15.2
1913 Female, age 42, unknown 11.2
2668 Female, age 75, unknown 11.2
1839 Male, age 51, unknown 10.9
1796 Male, age 53, unknown 10.6
1995 Male, age 72, unknown 10.5
1895 Male, age 76, right hemisphere 9.6
2587 Male, age 74, left hemisphere 9.4
2087 Female, age 72, unknown 9.1
2261 Male, age 18, unknown 8.6
Ventral tegmental area
nTPM: 9.5
2021 Male, age 53, unknown 10.4
1942 Male, age 51, unknown 9.7
2223 Female, age 72, unknown 9.5
2218 Male, age 76, both hemispheres 9.4
2410 Female, age 72, unknown 9.1
1915 Female, age 42, unknown 8.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.3
Samples: 139

Max nTPM: 39.1
Min nTPM: 10.6
Std nTPM: 3.9
Median nTPM: 17.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 39.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 31.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 27.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 27.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 27.4
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 27.0
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 26.5
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 26.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 25.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 24.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 15.4
FF:10158-103A5 76 years, female 15.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.4
Sample A Female 5.9
Sample B Female 5.4
Sample C Male 5.7
Sample D Male 6.0
Midbrain
nTPM: 5.9
Samples: 4

Max nTPM: 6.8
Min nTPM: 4.9
Sample A Female 5.4
Sample B Female 4.9
Sample C Male 6.8
Sample D Male 6.6
Periaqueductal gray
nTPM: 5.1
Samples: 3

Max nTPM: 5.8
Min nTPM: 4.8
Sample B Female 5.8
Sample C Male 4.8
Sample D Male 4.8
Superior colliculi
nTPM: 6.6
Samples: 4

Max nTPM: 7.0
Min nTPM: 6.1
Sample A Female 6.7
Sample B Female 7.0
Sample C Male 6.1
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 32.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 32.6
Samples: 4

Max nTPM: 36.1
Min nTPM: 30.2
Sample A Male 32.2
Sample B Male 31.8
Sample C Female 30.2
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71763900 Antisense, RP_050921_02_G11, Mouse strain C57BL/6J (56 days, male) 0.0

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