MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:15.0 nTPM
HPA Brain:32.1 nTPM
GTEx:15.0 nTPM
FANTOM5:20.9 Scaled Tags Per Million
Pig:16.0 nTPM
Mouse:51.9 nTPM
Allen mouse:2.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 32.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 26.3
2586 Male, age 75, left hemisphere 46.7
2019 Male, age 18, unknown 27.9
1827 Male, age 72, unknown 26.8
2666 Male, age 74, left hemisphere 26.8
2828 Female, age 72, unknown 24.8
1833 Male, age 53, unknown 24.2
2411 Female, age 72, unknown 23.2
1870 Female, age 42, unknown 23.1
1830 Male, age 51, unknown 20.9
2219 Male, age 76, both hemispheres 18.3
Dorsal raphe nucleus
nTPM: 28.2
1828 Male, age 53, unknown 32.0
2047 Male, age 72, unknown 30.9
2298 Female, age 72, unknown 30.4
2016 Female, age 72, unknown 25.5
2750 Male, age 76, both hemispheres 22.1
Inferior colliculus
nTPM: 28.0
1848 Female, age 42, unknown 29.2
1890 Male, age 53, unknown 28.4
2097 Female, age 72, unknown 27.3
2849 Male, age 72, unknown 27.2
Median raphe nucleus
nTPM: 23.2
2220 Male, age 76, midline 23.2
Periaquaductal grey, anterior
nTPM: 29.3
2502 Female, age 75, unknown 31.1
1795 Male, age 51, unknown 28.7
1947 Male, age 18, unknown 28.3
Periaquaductal grey, dorsal
nTPM: 27.7
2850 Male, age 76, both hemispheres 34.9
1840 Male, age 53, unknown 28.3
2464 Female, age 72, unknown 23.8
1831 Male, age 72, unknown 23.7
Periaquaductal grey, lateral
nTPM: 26.9
2140 Male, age 76, both hemispheres 37.4
2053 Male, age 18, unknown 22.4
2272 Male, age 74, both hemispheres 21.0
Pretectal area
nTPM: 27.3
2007 Male, age 72, unknown 34.5
1816 Male, age 51, unknown 33.5
1944 Female, age 72, unknown 31.0
2667 Female, age 75, unknown 29.0
1817 Female, age 42, unknown 27.6
2316 Male, age 76, right hemisphere 27.2
2825 Male, age 18, unknown 26.0
1815 Male, age 53, unknown 24.4
2224 Female, age 72, unknown 23.1
2273 Male, age 74, both hemispheres 22.3
2407 Male, age 75, both hemispheres 22.1
Red nucleus
nTPM: 26.4
1821 Female, age 72, unknown 28.7
2584 Male, age 75, left hemisphere 28.6
1954 Female, age 42, unknown 28.0
2588 Male, age 74, left hemisphere 27.9
2769 Male, age 72, unknown 27.5
2227 Male, age 72, unknown 26.8
2725 Female, age 75, unknown 26.7
2823 Male, age 76, right hemisphere 26.2
2785 Male, age 18, unknown 25.7
1904 Male, age 53, unknown 24.1
2503 Female, age 72, unknown 23.6
1865 Male, age 51, unknown 22.4
Substantia nigra
nTPM: 32.1
1916 Female, age 42, unknown 45.0
1941 Male, age 53, unknown 34.1
1851 Male, age 51, unknown 33.3
2665 Male, age 74, both hemispheres 33.3
1889 Female, age 72, unknown 31.6
2241 Male, age 72, unknown 30.9
2699 Male, age 18, unknown 30.6
2583 Male, age 75, right hemisphere 30.3
2409 Female, age 72, unknown 26.5
2590 Female, age 75, unknown 25.8
Superior colliculus
nTPM: 25.1
2664 Male, age 75, both hemispheres 30.6
2261 Male, age 18, unknown 30.0
2087 Female, age 72, unknown 29.5
1796 Male, age 53, unknown 27.1
1839 Male, age 51, unknown 26.5
2668 Female, age 75, unknown 26.2
1895 Male, age 76, right hemisphere 24.4
2587 Male, age 74, left hemisphere 22.4
1995 Male, age 72, unknown 19.0
1913 Female, age 42, unknown 15.3
Ventral tegmental area
nTPM: 27.2
1915 Female, age 42, unknown 34.4
2410 Female, age 72, unknown 29.1
1942 Male, age 51, unknown 28.0
2218 Male, age 76, both hemispheres 27.7
2021 Male, age 53, unknown 24.1
2223 Female, age 72, unknown 20.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.0
Samples: 139

Max nTPM: 50.2
Min nTPM: 4.4
Std nTPM: 8.0
Median nTPM: 13.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 50.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 41.1
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 39.0
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 38.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 34.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 32.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 32.6
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 31.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 30.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 27.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 20.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 20.9
FF:10158-103A5 76 years, female 20.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 16.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 12.5
Samples: 4

Max nTPM: 17.5
Min nTPM: 7.0
Sample A Female 17.5
Sample B Female 11.1
Sample C Male 14.2
Sample D Male 7.0
Midbrain
nTPM: 13.3
Samples: 4

Max nTPM: 18.4
Min nTPM: 8.9
Sample A Female 8.9
Sample B Female 10.7
Sample C Male 18.4
Sample D Male 15.3
Periaqueductal gray
nTPM: 11.2
Samples: 3

Max nTPM: 13.5
Min nTPM: 9.8
Sample B Female 10.4
Sample C Male 13.5
Sample D Male 9.8
Superior colliculi
nTPM: 16.0
Samples: 4

Max nTPM: 18.1
Min nTPM: 14.7
Sample A Female 18.1
Sample B Female 14.7
Sample C Male 16.1
Sample D Male 15.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 51.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.9
Samples: 4

Max nTPM: 52.4
Min nTPM: 51.1
Sample A Male 51.8
Sample B Male 52.4
Sample C Female 52.4
Sample D Female 51.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.8
69059889 Antisense, RP_050317_04_D09, Mouse strain C57BL/6J (56 days, male) 3.0
544516 Antisense, RP_040625_01_F01, Mouse strain C57BL/6J (56 days, male) 2.6

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