We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
NACC2
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields ยป
Search result

 
Field
All
Term
Gene name
Class
Blood group antigen proteins
Subclass
 
Class
 
Keyword
Chromosome
External id
Tissue
 
Cell type
 
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Cluster
Reliability
Cell type
Category
Cluster
Tissue
 
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Interacting gene
Number of interactions
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Yes
Protein structure
In atlas
Column
Gene


                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                        • SPECIFICITY
                        • DISTRIBUTION
                        • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • RELIABILITY
                          • SUBCELLULAR VARIATION
                          • MULTILOCALIZATION
                          • OTHER
                          • SPECIFICITY
                          • DISTRIBUTION
                          • EXPRESSION
                          • Check all
                          • Uncheck all
                                  • SUMMARY

                                  • TISSUE

                                  • BRAIN

                                  • SINGLE CELL

                                  • TISSUE CELL

                                  • PATHOLOGY

                                  • DISEASE

                                  • IMMUNE

                                  • BLOOD

                                  • SUBCELL

                                  • CELL LINE

                                  • STRUCTURE

                                  • INTERACTION

                                  • NACC2
                                  BRAIN MEDULLA OBLONGATA Show tissue menu
                                  AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA
                                  MIDBRAIN OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                  ANTIBODIES
                                  AND
                                  VALIDATION
                                  Brain proteome
                                  Medulla oblongata
                                  MEDULLA OBLONGATA - Expression summary
                                  Protein expressioni

                                  On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                  Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                  If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                  No data
                                  RNA expressioni

                                  A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                  The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                  Scroll down to view mRNA expression data in more detail.
                                  HPA Brain:241.2 nTPM
                                  FANTOM5:39.4 Scaled Tags Per Million
                                  Pig:93.6 nTPM
                                  Allen mouse:5.8 Expression energy

                                  MEDULLA OBLONGATA - HPA Brain RNA-seq
                                  Max nTPM 241.2
                                  Sample id Sample description nTPM
                                  Area postrema
                                  nTPM: 241.2
                                  2799 Male, age 61, both hemispheres 380.4
                                  2306 Male, age 80, both hemispheres 204.4
                                  2054 Male, age 76, both hemispheres 138.7
                                  Dorsal medullary reticular nucleus
                                  nTPM: 192.1
                                  2088 Male, age 76, both hemispheres 220.6
                                  2373 Male, age 61, both hemispheres 189.5
                                  2040 Female, age 85, both hemispheres 166.1
                                  Dorsal motor vagal complex
                                  nTPM: 171.2
                                  2797 Male, age 61, both hemispheres 266.9
                                  2185 Male, age 76, both hemispheres 249.5
                                  2643 Male, age 74, both hemispheres 163.6
                                  2000 Male, age 74, unknown 160.2
                                  2844 Male, age 55, unknown 154.5
                                  2133 Female, age 91, both hemispheres 146.6
                                  2807 Female, age 85, both hemispheres 124.7
                                  2813 Female, age 72, unknown 103.4
                                  Gigantocellular reticular nuclei, medullary
                                  nTPM: 191.5
                                  2314 Male, age 61, both hemispheres 235.6
                                  2387 Female, age 91, both hemispheres 210.0
                                  2022 Male, age 76, right hemisphere 193.5
                                  2310 Male, age 80, both hemispheres 186.2
                                  2462 Male, age 74, both hemispheres 162.7
                                  1876 Female, age 85, both hemispheres 161.1
                                  Gigantocellular reticular nuclei, pars
                                  nTPM: 199.4
                                  2168 Male, age 76, both hemispheres 242.5
                                  2706 Male, age 80, both hemispheres 199.3
                                  2330 Male, age 80, both hemispheres 199.0
                                  2084 Female, age 85, both hemispheres 180.7
                                  2336 Male, age 61, both hemispheres 175.6
                                  Inferior olive
                                  nTPM: 227.2
                                  2379 Male, age 80, both hemispheres 250.2
                                  2178 Male, age 61, both hemispheres 245.4
                                  2085 Female, age 85, both hemispheres 216.2
                                  2628 Female, age 91, both hemispheres 216.1
                                  2563 Male, age 74, both hemispheres 208.1
                                  Lateral medullary reticular nucleus
                                  nTPM: 193.3
                                  2044 Male, age 76, both hemispheres 224.2
                                  2852 Male, age 80, both hemispheres 208.6
                                  2804 Female, age 91, both hemispheres 207.2
                                  2374 Male, age 61, both hemispheres 202.8
                                  2190 Female, age 85, both hemispheres 167.7
                                  2305 Male, age 74, both hemispheres 149.5
                                  Medial olivary nucleus
                                  nTPM: 185.9
                                  1962 Male, age 76, both hemispheres 209.0
                                  2138 Female, age 91, both hemispheres 191.9
                                  2851 Male, age 80, both hemispheres 175.4
                                  1943 Male, age 61, both hemispheres 167.1
                                  Medial vestibular nucleus
                                  nTPM: 202.8
                                  2093 Male, age 80, both hemispheres 248.1
                                  2624 Male, age 61, both hemispheres 207.1
                                  2803 Female, age 91, both hemispheres 205.8
                                  2801 Male, age 74, both hemispheres 193.5
                                  2134 Male, age 76, both hemispheres 186.9
                                  2743 Female, age 85, both hemispheres 175.6
                                  Motor hypoglossal nucleus
                                  nTPM: 159.4
                                  2125 Female, age 91, both hemispheres 208.7
                                  2182 Male, age 80, both hemispheres 186.9
                                  2132 Female, age 85, both hemispheres 164.6
                                  2461 Male, age 61, both hemispheres 130.0
                                  2277 Male, age 76, both hemispheres 107.0
                                  Nucleus ambiguus
                                  nTPM: 220.7
                                  2071 Male, age 76, both hemispheres 239.3
                                  2096 Female, age 85, both hemispheres 202.1
                                  Nucleus cuneatus
                                  nTPM: 239.6
                                  2100 Male, age 76, both hemispheres 333.6
                                  2131 Male, age 76, both hemispheres 282.3
                                  2805 Female, age 91, both hemispheres 264.0
                                  2564 Male, age 74, both hemispheres 249.7
                                  2380 Male, age 80, both hemispheres 215.7
                                  2376 Male, age 61, both hemispheres 210.8
                                  2808 Female, age 85, both hemispheres 206.6
                                  2562 Male, age 61, both hemispheres 200.9
                                  2381 Male, age 80, both hemispheres 192.6
                                  Nucleus gracilis
                                  nTPM: 196.6
                                  2299 Female, age 85, both hemispheres 219.4
                                  2382 Male, age 80, both hemispheres 194.5
                                  2627 Male, age 74, both hemispheres 176.0
                                  Nucleus raphe obscurus
                                  nTPM: 203.0
                                  2142 Male, age 76, midline 223.8
                                  2845 Female, age 85, midline 193.2
                                  2800 Male, age 61, midline 191.9
                                  Nucleus raphe pallidus
                                  nTPM: 184.8
                                  2145 Male, age 76, midline 227.0
                                  1924 Male, age 61, midline 166.8
                                  2183 Male, age 80, midline 160.8
                                  Nucleus tractus solitarii
                                  nTPM: 116.2
                                  2191 Female, age 85, both hemispheres 130.8
                                  2144 Female, age 91, right hemisphere 120.4
                                  2656 Male, age 76, both hemispheres 108.5
                                  2307 Male, age 80, both hemispheres 105.2
                                  Parvicellular reticular nuclei
                                  nTPM: 193.7
                                  2095 Male, age 76, both hemispheres 227.6
                                  2119 Male, age 80, both hemispheres 177.8
                                  2558 Male, age 74, both hemispheres 175.8
                                  Parvicellular reticular nuclei, medullary
                                  nTPM: 180.9
                                  2091 Female, age 85, both hemispheres 188.8
                                  2181 Male, age 80, left hemisphere 177.0
                                  2189 Female, age 91, both hemispheres 176.9
                                  Peritrigeminal nucleus
                                  nTPM: 193.2
                                  2136 Male, age 76, both hemispheres 235.1
                                  2067 Female, age 85, both hemispheres 183.3
                                  2179 Male, age 61, both hemispheres 161.3
                                  Prepositus hypoglossal nucleus
                                  nTPM: 196.1
                                  2855 Female, age 85, right hemisphere 214.1
                                  2086 Male, age 80, both hemispheres 178.1
                                  Spinal trigeminal nucleus, caudal
                                  nTPM: 200.2
                                  2447 Male, age 76, both hemispheres 290.9
                                  2390 Female, age 91, both hemispheres 210.5
                                  2308 Male, age 80, both hemispheres 184.1
                                  2312 Male, age 61, both hemispheres 169.4
                                  2642 Male, age 74, both hemispheres 146.2
                                  Spinal trigeminal nucleus, interpolar
                                  nTPM: 178.5
                                  2066 Male, age 76, right hemisphere 205.1
                                  2625 Male, age 61, both hemispheres 198.7
                                  2389 Female, age 91, both hemispheres 179.5
                                  2033 Male, age 80, both hemispheres 166.0
                                  2386 Female, age 85, both hemispheres 143.1
                                  Spinal vestibular nucleus
                                  nTPM: 201.7
                                  2748 Male, age 76, both hemispheres 221.5
                                  2384 Male, age 74, both hemispheres 217.2
                                  2806 Female, age 85, both hemispheres 204.9
                                  2186 Female, age 91, both hemispheres 194.6
                                  2780 Male, age 80, both hemispheres 191.3
                                  2796 Male, age 61, both hemispheres 180.9
                                  Superior vestibular nucleus
                                  nTPM: 171.9
                                  2015 Male, age 80, both hemispheres 197.1
                                  2061 Male, age 76, both hemispheres 187.5
                                  2383 Male, age 74, both hemispheres 131.2
                                  Ventral medullary reticular nucleus
                                  nTPM: 202.5
                                  2372 Male, age 61, both hemispheres 207.7
                                  2060 Male, age 76, both hemispheres 197.4
                                  Ventrolateral medulla, A1-C1 cell groups
                                  nTPM: 196.9
                                  1986 Male, age 76, both hemispheres 225.2
                                  2302 Female, age 91, both hemispheres 215.1
                                  2118 Male, age 80, both hemispheres 184.0
                                  2741 Female, age 85, both hemispheres 180.3
                                  2180 Male, age 61, both hemispheres 179.8

                                  MEDULLA OBLONGATA - FANTOM5 CAGEi

                                  RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                  Max Scaled Tags Per Million 39.4
                                  FANTOM5 sample id Sample description Scaled Tags Per Million
                                  Medulla oblongata
                                  Scaled Tags Per Million: 39.4
                                  FF:10038-101F2 18-64 years, mixed 44.9
                                  FF:10155-103A2 76 years, female 39.6
                                  FF:10174-103C3 60 years, female 33.7

                                  MEDULLA OBLONGATA - Pig RNA-seqi

                                  RNA-seq data obtained from pig brain is reported as nTPM .

                                  Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                  Average nTPM 93.6
                                  Pig sample Sample description nTPM
                                  88.994.098.779.5106.90102030405060708090100
                                  88.994.098.779.5106.90102030405060708090100
                                  Medulla oblongata
                                  nTPM: 93.6
                                  Samples: 4

                                  Max nTPM: 106.9
                                  Min nTPM: 79.5
                                  Sample A Female 92.1
                                  Sample B Female 106.9
                                  Sample C Male 95.9
                                  Sample D Male 79.5

                                  MEDULLA OBLONGATA - Allen Mouse ISHi

                                  In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                  Max Expression energy 5.8
                                  Allen experiment id Experiment description Expression energy
                                  Medulla oblongata
                                  Expression energy: 5.8
                                  70743871 Antisense, RP_050725_01_G11, Mouse strain C57BL/6J (56 days, male) 7.8
                                  77910763 Antisense, RP_070208_04_G01, Mouse strain C57BL/6J (56 days, male) 4.9
                                  671260 Antisense, RP_040914_02_C11, Mouse strain C57BL/6J (56 days, male) 4.8

                                  Contact

                                  • NEWS ARTICLES
                                  • PRESS ROOM

                                  The Project

                                  • INTRODUCTION
                                  • ORGANIZATION
                                  • PUBLICATIONS

                                  The Human Protein Atlas

                                  • DOWNLOADABLE DATA
                                  • LICENCE & CITATION
                                  • HELP & FAQ
                                  The Human Protein Atlas project is funded
                                  by the Knut & Alice Wallenberg Foundation.


                                  contact@proteinatlas.org