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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
h
m
l
n
Ganglion cells :
Not detected
Inner nuclear layer:
Not detected
Inner plexiform layer:
Not detected
Limiting membrane:
Not detected
Nerve fiber layer:
Not detected
Outer plexiform layer:
Not detected
Photoreceptor cells:
High
Pigment epithelial cells:
Not detected
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
304.3
nTPM
GTEx:
304.3
nTPM
FANTOM5:
137.1
Scaled Tags Per Million
Pig:
228.3
nTPM
Mouse:
757.5
nTPM
RETINA - Extended tissue profilei
For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.
, antibody HPA036819
Pigment epithelial cells
Not detected
Photoreceptor cells
High
Limiting membrane
Not detected
Outer plexiform layer
Not detected
Inner nuclear layer
Not detected
Inner plexiform layer
Not detected
Ganglion cells
Not detected
Nerve fiber layer
Not detected
RETINA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
304.3
GTEx sample id
Sample description
nTPM
Retina Average nTPM: 304.3
Samples: 105
Max nTPM: 529.3
Min nTPM: 100.9
Std nTPM: 86.1
Median nTPM:
352_1
62 years, male
529.3
172_1
72 years, female
502.4
163_1
78 years, male
467.2
237_1
82 years, male
461.5
251_1
78 years, male
431.4
335_1
73 years, female
429.1
319_1
81 years, male
424.4
177_1
74 years, male
423.7
350_1
84 years, female
412.4
229_1
69 years, female
410.9
425_1
59 years, female
410.8
406_1
79 years, male
409.2
503_1
68 years, male
408.5
246_1
77 years, male
397.3
394_1
75 years, female
396.7
286_1
68 years, female
396.6
293_1
68 years, female
396.1
189_1
76 years, male
389.6
386_1
76 years, male
389.5
376_1
75 years, female
389.4
526_1
61 years, male
388.9
292_1
71 years, male
386.5
468_1
89 years, male
383.1
375_1
74 years, female
381.4
480_1
63 years, male
379.5
355_1
70 years, female
373.3
349_1
83 years, male
372.5
377_1
82 years, female
369.9
316_1
62 years, male
365.5
318_1
68 years, male
362.1
243_1
75 years, male
360.5
347_1
72 years, male
358.6
517_1
88 years, male
352.5
354_1
81 years, female
346.7
499_1
55 years, female
344.1
405_1
91 years, male
343.6
321_1
62 years, female
342.6
6_1
73 years, female
342.3
389_1
86 years, female
334.3
322_1
76 years, male
333.4
266_1
85 years, male
332.2
218_1
71 years, female
329.8
115_1
83 years, male
327.6
353_1
82 years, female
325.5
356_1
87 years, female
325.1
320_1
89 years, female
315.8
264_1
73 years, female
315.2
447_1
81 years, male
314.2
404_1
82 years, female
310.3
99_1
64 years, male
309.6
313_1
79 years, female
308.9
117_1
61 years, male
307.8
2_1
77 years, female
304.2
254_1
77 years, female
304.1
153_1
70 years, female
303.9
379_1
60 years, male
303.8
9_1
66 years, female
303.0
351_1
91 years, male
300.8
217_1
76 years, male
299.6
137_1
83 years, male
295.8
324_1
76 years, male
293.0
291_1
76 years, male
292.5
311_1
78 years, male
288.7
126_1
63 years, male
288.0
348_1
84 years, male
285.9
518_1
75 years, female
285.3
265_1
87 years, male
275.0
415_1
77 years, female
274.4
35_1
74 years, female
264.0
142_1
61 years, female
257.4
317_1
60 years, male
255.6
396_1
62 years, male
251.7
506_1
65 years, male
247.9
414_1
84 years, female
246.9
307_1
66 years, female
246.3
173_1
67 years, male
245.8
295_1
61 years, female
240.2
466_1
57 years, female
238.5
495_1
57 years, female
233.4
384_1
83 years, male
230.8
145_1
84 years, male
227.2
18_1
88 years, male
224.1
43_1
64 years, female
222.7
81_1
67 years, male
220.4
490_1
67 years, female
216.9
42_1
85 years, male
216.2
120_1
70 years, female
216.2
315_1
62 years, female
209.9
162_1
79 years, female
209.5
32_1
67 years, male
209.4
452_1
88 years, female
208.6
288_1
66 years, female
206.9
139_1
64 years, female
204.5
109_1
81 years, female
200.7
413_1
59 years, female
196.7
119_1
70 years, female
190.7
4_1
88 years, female
189.0
17_1
71 years, male
181.6
314_1
67 years, male
179.6
149_1
88 years, male
161.8
41_1
94 years, female
161.3
501_1
88 years, male
155.9
89_1
63 years, male
151.6
308_1
70 years, female
112.7
491_1
89 years, female
100.9
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RETINA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.