MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:12.5 nTPM
HPA Brain:16.1 nTPM
GTEx:12.5 nTPM
FANTOM5:47.8 Scaled Tags Per Million
Pig:21.8 nTPM
Mouse:25.4 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.0
2019 Male, age 18, unknown 16.1
2411 Female, age 72, unknown 16.0
1870 Female, age 42, unknown 14.2
1827 Male, age 72, unknown 13.7
1830 Male, age 51, unknown 12.8
1833 Male, age 53, unknown 12.4
2828 Female, age 72, unknown 12.3
2219 Male, age 76, both hemispheres 12.1
2586 Male, age 75, left hemisphere 10.6
2666 Male, age 74, left hemisphere 10.2
Dorsal raphe nucleus
nTPM: 14.5
2298 Female, age 72, unknown 16.2
2750 Male, age 76, both hemispheres 16.0
1828 Male, age 53, unknown 14.0
2016 Female, age 72, unknown 13.9
2047 Male, age 72, unknown 12.6
Inferior colliculus
nTPM: 14.0
2097 Female, age 72, unknown 16.6
1848 Female, age 42, unknown 14.9
2849 Male, age 72, unknown 12.5
1890 Male, age 53, unknown 12.1
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Periaquaductal grey, anterior
nTPM: 14.1
1947 Male, age 18, unknown 15.1
2502 Female, age 75, unknown 13.8
1795 Male, age 51, unknown 13.4
Periaquaductal grey, dorsal
nTPM: 13.6
1840 Male, age 53, unknown 14.8
2850 Male, age 76, both hemispheres 14.4
1831 Male, age 72, unknown 13.2
2464 Female, age 72, unknown 12.1
Periaquaductal grey, lateral
nTPM: 15.0
2272 Male, age 74, both hemispheres 17.3
2053 Male, age 18, unknown 14.4
2140 Male, age 76, both hemispheres 13.2
Pretectal area
nTPM: 16.1
2007 Male, age 72, unknown 20.2
1816 Male, age 51, unknown 18.3
2273 Male, age 74, both hemispheres 17.8
1815 Male, age 53, unknown 17.5
1817 Female, age 42, unknown 17.5
1944 Female, age 72, unknown 15.9
2667 Female, age 75, unknown 15.8
2224 Female, age 72, unknown 15.6
2316 Male, age 76, right hemisphere 13.3
2407 Male, age 75, both hemispheres 13.0
2825 Male, age 18, unknown 12.6
Red nucleus
nTPM: 14.1
2785 Male, age 18, unknown 16.3
1821 Female, age 72, unknown 15.5
2725 Female, age 75, unknown 15.4
1865 Male, age 51, unknown 15.3
1904 Male, age 53, unknown 14.4
2823 Male, age 76, right hemisphere 14.1
1954 Female, age 42, unknown 14.0
2588 Male, age 74, left hemisphere 14.0
2503 Female, age 72, unknown 13.3
2227 Male, age 72, unknown 13.1
2769 Male, age 72, unknown 12.9
2584 Male, age 75, left hemisphere 11.2
Substantia nigra
nTPM: 14.7
1916 Female, age 42, unknown 18.5
1889 Female, age 72, unknown 17.1
2241 Male, age 72, unknown 16.0
1941 Male, age 53, unknown 15.6
1851 Male, age 51, unknown 15.4
2409 Female, age 72, unknown 13.5
2665 Male, age 74, both hemispheres 13.2
2699 Male, age 18, unknown 13.1
2583 Male, age 75, right hemisphere 12.9
2590 Female, age 75, unknown 12.0
Superior colliculus
nTPM: 13.8
2587 Male, age 74, left hemisphere 15.9
2668 Female, age 75, unknown 15.7
1913 Female, age 42, unknown 14.9
1895 Male, age 76, right hemisphere 14.3
1995 Male, age 72, unknown 14.3
2087 Female, age 72, unknown 14.3
1796 Male, age 53, unknown 14.0
2261 Male, age 18, unknown 12.9
1839 Male, age 51, unknown 12.6
2664 Male, age 75, both hemispheres 9.4
Ventral tegmental area
nTPM: 14.5
2218 Male, age 76, both hemispheres 18.6
2410 Female, age 72, unknown 16.4
1915 Female, age 42, unknown 13.5
2021 Male, age 53, unknown 13.3
1942 Male, age 51, unknown 12.6
2223 Female, age 72, unknown 12.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 12.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 12.5
Samples: 139

Max nTPM: 23.3
Min nTPM: 5.7
Std nTPM: 2.8
Median nTPM: 12.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 23.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 22.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 21.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 20.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 20.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 19.2
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 17.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 17.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 17.2
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 17.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 16.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 47.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 47.8
FF:10158-103A5 76 years, female 47.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 21.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 19.3
Samples: 4

Max nTPM: 21.9
Min nTPM: 15.3
Sample A Female 21.3
Sample B Female 18.6
Sample C Male 21.9
Sample D Male 15.3
Midbrain
nTPM: 21.8
Samples: 4

Max nTPM: 25.3
Min nTPM: 19.0
Sample A Female 21.2
Sample B Female 19.0
Sample C Male 25.3
Sample D Male 21.8
Periaqueductal gray
nTPM: 17.5
Samples: 3

Max nTPM: 18.3
Min nTPM: 16.9
Sample B Female 17.3
Sample C Male 18.3
Sample D Male 16.9
Superior colliculi
nTPM: 20.7
Samples: 4

Max nTPM: 23.5
Min nTPM: 17.0
Sample A Female 21.2
Sample B Female 17.0
Sample C Male 23.5
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.4
Samples: 4

Max nTPM: 27.3
Min nTPM: 22.9
Sample A Male 25.9
Sample B Male 25.6
Sample C Female 22.9
Sample D Female 27.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
69818369 Antisense, RP_050510_04_H08, Mouse strain C57BL/6J (56 days, male) 0.2

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