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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
47.9
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 47.9
Samples: 152
Max nTPM: 116.3
Min nTPM: 2.5
Std nTPM: 26.1
Median nTPM: 44.4
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
116.3
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
114.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
112.5
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
100.6
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
96.2
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
95.8
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
95.1
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
93.6
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
89.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
88.9
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
88.3
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
87.8
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
87.5
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
86.6
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
85.5
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
84.8
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
83.9
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
81.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
81.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
78.0
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
78.0
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
76.8
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
76.6
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
76.5
GTEX-R55E-0011-R4A-SM-2TC5H
20-29 years, male
76.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
75.8
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
75.1
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
74.4
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
72.2
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
71.7
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
71.7
GTEX-P44G-0011-R4A-SM-2I3FB
30-39 years, male
71.3
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
71.3
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
70.9
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
69.9
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
69.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
67.7
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
66.5
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
66.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
65.8
GTEX-P44H-0011-R4A-SM-2XCEW
40-49 years, male
65.7
GTEX-NL3H-0011-R4a-SM-2I3GK
60-69 years, male
65.2
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
65.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
65.0
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
64.5
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
63.9
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
63.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
63.3
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
62.9
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
61.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
60.7
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
59.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
59.3
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
58.9
GTEX-UTHO-0011-R4A-SM-3GIJP
60-69 years, male
58.3
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
56.7
GTEX-T5JC-0011-R4A-SM-32PLT
20-29 years, male
56.2
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
55.9
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
55.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
55.0
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
54.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
54.3
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
54.0
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
53.5
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
52.7
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
51.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
50.9
GTEX-T6MN-0011-R4A-SM-32QPG
50-59 years, male
49.2
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
46.9
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
46.8
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
46.1
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
45.8
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
45.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
45.0
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
44.8
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
44.6
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
44.2
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
44.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
43.8
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
43.7
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
43.3
GTEX-18464-0011-R4a-SM-7LG6T
50-59 years, male
43.2
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
42.5
GTEX-QMR6-0011-R4A-SM-32PKU
50-59 years, male
42.0
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
41.2
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
41.0
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
40.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
40.2
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
40.1
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
39.9
GTEX-QDT8-0011-R4A-SM-32PKM
30-39 years, female
39.9
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
38.7
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
38.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
37.0
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
36.7
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
36.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
36.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
35.5
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
34.4
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
33.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
33.1
GTEX-N7MS-0011-R4a-SM-2HMKW
60-69 years, male
32.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
31.8
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
30.4
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
30.4
GTEX-Y8DK-0011-R4A-SM-EXUR1
60-69 years, male
29.6
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
29.3
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
28.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
28.5
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
28.0
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
27.6
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
27.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
26.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
24.7
GTEX-15DDE-0011-R4b-SM-7KULI
50-59 years, female
24.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
24.1
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
24.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
23.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
23.4
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
22.9
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
22.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
22.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
22.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
21.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
21.6
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
21.2
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
20.7
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
20.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
19.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
19.4
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
18.7
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
18.3
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
17.6
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
17.4
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
17.2
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
16.9
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
16.7
GTEX-1JJEA-0011-R4a-SM-EXUTC
60-69 years, male
15.5
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
15.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS
60-69 years, male
13.9
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
13.1
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
12.9
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
11.8
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
11.7
GTEX-ZE9C-0011-R4a-SM-4WKH6
60-69 years, male
11.6
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
9.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
6.6
GTEX-X4EP-0011-R4B-SM-3P627
60-69 years, female
6.6
GTEX-183WM-0011-R4a-SM-7LG6S
70-79 years, female
5.8
GTEX-1H2FU-0011-R4a-SM-CL551
60-69 years, female
5.1
GTEX-145MI-0011-R4b-SM-5PNZH
60-69 years, female
4.0
GTEX-1CB4J-0011-R4b-SM-9WG5P
60-69 years, male
2.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Average nTPM
73.4
Mouse sample
Sample description
nTPM
Amygdala nTPM: 73.5
Samples: 4
Max nTPM: 88.3
Min nTPM: 63.8
Sample A
Male
70.4
Sample B
Male
63.8
Sample C
Female
88.3
Sample D
Female
71.3
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
The Human Protein Atlas project is funded
