HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Mouse brain, Intensity
Hippocampal formationi 		26.350
RNA expressioni
Consensus:38.0 nTPM
HPA Brain:102.8 nTPM
GTEx:38.0 nTPM
FANTOM5:83.1 Scaled Tags Per Million
Pig:150.5 nTPM
Mouse:92.0 nTPM
Allen mouse:23.6 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA008057Antibody CAB002059
Glial cells Not detectedNot detected
Neuronal cells Not detectedMedium




HIPPOCAMPAL FORMATION - Mouse brain profilei , antibody HPA008057
Hippocampal formation mean intensity 26.350
intensityi
FRONT BACK
Polymorph layer of the dentate gyrus 11.719
Molecular layer of the dentate gyrus 7.157
Granular dentate gyrus 18.832
CA1 - oriens layer 3.269
CA1 - pyramidal layer 26.350
CA1 - radiatum layer 6.003
CA2 - oriens layer 4.199
CA2 - pyramidal layer 18.216
CA2 - radiatum layer 4.070
CA3 - oriens layer 1.357
CA3 - pyramidal layer 16.034
CA3 - radiatum layer 5.873
Stratum lucidum 11.449
Lacunosum moleculare 4.797
Subiculum 13.606

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 102.8
Sample id Sample description nTPM
Hippocampus
nTPM: 41.7
1898 Male, age 80, left hemisphere 61.2
2621 Female, age 67, right hemisphere 49.3
2148 Female, age 91, left hemisphere 40.2
2529 Female, age 94, left hemisphere 35.9
1911 Female, age 85, right hemisphere 34.9
1855 Male, age 76, left hemisphere 28.6
Dentate gyrus
nTPM: 50.5
1927 Female, age 91, both hemispheres 77.5
2246 Female, age 85, both hemispheres 52.2
2531 Female, age 67, both hemispheres 47.8
2528 Male, age 74, both hemispheres 46.5
2530 Female, age 94, left hemisphere 44.8
2010 Male, age 76, both hemispheres 34.4
Entorhinal gyrus
nTPM: 66.2
2613 Female, age 94, left hemisphere 89.5
2764 Male, age 80, right hemisphere 81.0
1938 Female, age 85, left hemisphere 73.2
1787 Male, age 76, left hemisphere 63.7
2686 Male, age 75, right hemisphere 51.8
2117 Female, age 91, right hemisphere 37.9
Hippocampus, CA1
nTPM: 49.4
2749 Male, age 80, left hemisphere 76.8
2527 Male, age 74, both hemispheres 53.5
2082 Female, age 91, right hemisphere 42.7
1873 Female, age 85, both hemispheres 42.5
2045 Male, age 76, both hemispheres 31.5
Hippocampus, CA2
nTPM: 56.0
2437 Female, age 94, left hemisphere 76.9
1892 Male, age 76, both hemispheres 72.1
1940 Female, age 85, left hemisphere 57.9
1963 Male, age 80, left hemisphere 46.5
2113 Female, age 91, right hemisphere 42.4
2249 Male, age 74, both hemispheres 40.1
Hippocampus, CA3
nTPM: 49.1
1867 Male, age 76, both hemispheres 56.4
2137 Male, age 80, left hemisphere 54.9
2620 Female, age 94, left hemisphere 53.5
2436 Male, age 74, both hemispheres 45.7
1891 Female, age 85, both hemispheres 44.7
2861 Female, age 67, both hemispheres 39.6
Parahippocampal cortex
nTPM: 75.6
1990 Female, age 91, right hemisphere 108.8
2250 Female, age 67, right hemisphere 102.4
2245 Female, age 91, both hemispheres 93.3
1850 Male, age 80, both hemispheres 85.5
2693 Female, age 94, both hemispheres 84.4
1933 Female, age 85, both hemispheres 67.0
2622 Female, age 67, right hemisphere 63.8
2532 Female, age 72, left hemisphere 60.8
2692 Male, age 74, both hemispheres 48.5
2018 Male, age 76, both hemispheres 41.6
Perirhinal gyrus
nTPM: 102.8
1847 Female, age 91, left hemisphere 141.5
2521 Female, age 94, right hemisphere 120.3
1794 Male, age 80, right hemisphere 99.9
1841 Female, age 85, right hemisphere 92.7
2848 Male, age 76, right hemisphere 59.7
Subiculum
nTPM: 52.6
1977 Female, age 85, both hemispheres 75.5
2438 Female, age 94, left hemisphere 68.1
2619 Male, age 74, both hemispheres 67.2
1901 Male, age 80, both hemispheres 54.9
2729 Female, age 91, right hemisphere 25.6
2042 Male, age 76, both hemispheres 24.2

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 38.0
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 38.0
Samples: 197

Max nTPM: 134.9
Min nTPM: 0.8
Std nTPM: 28.2
Median nTPM: 32.3
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 134.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 122.9
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 110.2
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 109.9
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 108.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 102.6
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 101.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 101.3
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 99.7
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 97.0
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 96.7
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 83.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 83.1
FF:10169-103B7 60 years, female 104.8
FF:10153-102I9 76 years, female 61.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 150.5
Pig sample Sample description nTPM
Subiculum
nTPM: 144.0
Samples: 4

Max nTPM: 156.9
Min nTPM: 128.6
Sample A Female 156.9
Sample B Female 128.6
Sample C Male 144.4
Sample D Male 146.2
Dorsal hippocampus
nTPM: 114.6
Samples: 4

Max nTPM: 136.7
Min nTPM: 85.2
Sample A Female 122.2
Sample B Female 114.3
Sample C Male 136.7
Sample D Male 85.2
Entorhinal cortex
nTPM: 150.5
Samples: 4

Max nTPM: 162.1
Min nTPM: 145.1
Sample A Female 162.1
Sample B Female 146.7
Sample C Male 145.1
Sample D Male 148.0
Ventral hippocampus
nTPM: 113.6
Samples: 4

Max nTPM: 130.5
Min nTPM: 93.0
Sample A Female 130.5
Sample B Female 93.0
Sample C Male 128.3
Sample D Male 102.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 92.0
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 91.6
Samples: 4

Max nTPM: 99.4
Min nTPM: 85.3
Sample A Male 90.3
Sample B Male 91.5
Sample C Female 85.3
Sample D Female 99.4
Hippocampal formation
nTPM: 92.0
Samples: 4

Max nTPM: 104.2
Min nTPM: 76.9
Sample A Male 76.9
Sample B Male 97.4
Sample C Female 104.2
Sample D Female 89.4

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 23.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 23.6
67765717 Antisense, RP_040916_01_E12, Mouse strain C57BL/6J (56 days, male) 24.0
71836833 Antisense, RP_051017_02_B08, Mouse strain C57BL/6J (56 days, male) 23.2

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