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On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
16.1
nTPM
Monaco:
18.3
nTPM
Schmiedel:
10.7
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
16.1
HPA sample
nTPM
gdT-cell nTPM: 16.1
Samples: 6
Max nTPM: 29.7
Min nTPM: 9.6
P10809_1007
9.6
P10809_1022
17.3
P10809_1041
29.7
P10809_1060
13.5
P10809_1077
13.6
P10809_1098
12.6
MAIT T-cell nTPM: 14.7
Samples: 6
Max nTPM: 22.1
Min nTPM: 10.5
P10809_1006
10.7
P10809_1024
16.7
P10809_1043
22.1
P10809_1062
14.0
P10809_1083
10.5
P10809_1097
14.3
Memory CD4 T-cell nTPM: 14.0
Samples: 6
Max nTPM: 20.1
Min nTPM: 10.0
P10809_1014
10.0
P10809_1026
20.1
P10809_1045
12.3
P10809_1064
16.5
P10809_1086
11.2
P10809_1113
14.1
Memory CD8 T-cell nTPM: 13.4
Samples: 5
Max nTPM: 18.4
Min nTPM: 7.7
P10809_1012
7.7
P10809_1027
11.2
P10809_1046
15.0
P10809_1065
18.4
P10809_1111
14.7
Naive CD4 T-cell nTPM: 15.0
Samples: 6
Max nTPM: 22.0
Min nTPM: 9.0
P10809_1015
9.0
P10809_1030
13.6
P10809_1049
22.0
P10809_1068
15.9
P10809_1085
14.9
P10809_1112
14.4
Naive CD8 T-cell nTPM: 13.1
Samples: 6
Max nTPM: 19.1
Min nTPM: 9.5
P10809_1016
9.5
P10809_1031
19.1
P10809_1050
15.4
P10809_1069
14.2
P10809_1087
10.8
P10809_1110
9.7
T-reg nTPM: 10.4
Samples: 6
Max nTPM: 19.6
Min nTPM: 3.1
P10809_1018
3.9
P10809_1037
19.6
P10809_1056
13.1
P10809_1075
14.9
P10809_1094
3.1
P10809_1106
8.0
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max nTPM
18.3
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 9.1
Samples: 4
Max nTPM: 12.3
Min nTPM: 4.8
RHH5202_R3573
4.8
RHH5230_R3602
12.1
RHH5259_R3631
7.0
RHH5288_R3660
12.3
Effector memory CD8 T-cell nTPM: 6.5
Samples: 4
Max nTPM: 9.4
Min nTPM: 4.1
RHH5203_R3574
5.7
RHH5231_R3603
6.9
RHH5260_R3632
9.4
RHH5289_R3661
4.1
MAIT T-cell nTPM: 6.3
Samples: 4
Max nTPM: 10.5
Min nTPM: 2.4
RHH5233_R3605
2.4
RHH5205_R3576
3.8
RHH5262_R3634
8.6
RHH5297_R3663
10.5
Memory CD4 T-cell TFH nTPM: 11.7
Samples: 4
Max nTPM: 15.4
Min nTPM: 9.6
RHH5300_R3666
15.4
RHH5236_R3608
9.6
RHH5265_R3637
10.7
RHH5208_R3579
11.1
Memory CD4 T-cell Th1 nTPM: 16.9
Samples: 4
Max nTPM: 22.8
Min nTPM: 10.8
RHH5210_R3581
22.8
RHH5302_R3668
14.3
RHH5238_R3610
19.5
RHH5267_R3639
10.8
Memory CD4 T-cell Th1/Th17 nTPM: 7.2
Samples: 4
Max nTPM: 11.0
Min nTPM: 3.4
RHH5303_R3669
9.3
RHH5211_R3582
3.4
RHH5239_R3611
5.2
RHH5268_R3640
11.0
Memory CD4 T-cell Th17 nTPM: 9.0
Samples: 4
Max nTPM: 12.0
Min nTPM: 5.5
RHH5304_R3670
11.0
RHH5212_R3583
5.5
RHH5240_R3612
12.0
RHH5269_R3641
7.5
Memory CD4 T-cell Th2 nTPM: 12.0
Samples: 4
Max nTPM: 16.2
Min nTPM: 8.3
RHH5305_R3671
12.8
RHH5213_R3584
10.5
RHH5241_R3613
16.2
RHH5270_R3642
8.3
Naive CD4 T-cell nTPM: 18.3
Samples: 4
Max nTPM: 22.5
Min nTPM: 12.1
RHH5306_R3672
21.9
RHH5214_R3585
12.1
RHH5242_R3614
16.8
RHH5271_R3643
22.5
Naive CD8 T-cell nTPM: 10.6
Samples: 4
Max nTPM: 17.8
Min nTPM: 5.2
RHH5201_R3572
8.8
RHH5229_R3601
5.2
RHH5258_R3630
17.8
RHH5287_R3659
10.5
Non-Vd2 gdTCR nTPM: 7.3
Samples: 4
Max nTPM: 10.0
Min nTPM: 3.4
RHH5235_R3607
8.9
RHH5264_R3636
10.0
RHH5207_R3578
3.4
RHH5299_R3665
6.7
T-reg nTPM: 10.0
Samples: 4
Max nTPM: 12.5
Min nTPM: 7.2
RHH5301_R3667
12.5
RHH5237_R3609
12.3
RHH5266_R3638
7.9
RHH5209_R3580
7.2
Terminal effector memory CD4 T-cell nTPM: 3.6
Samples: 2
Max nTPM: 4.3
Min nTPM: 2.9
RHH5243_R3615
4.3
RHH5272_R3644
2.9
Terminal effector memory CD8 T-cell nTPM: 8.5
Samples: 4
Max nTPM: 11.4
Min nTPM: 5.4
RHH5232_R3604
5.4
RHH5204_R3575
11.4
RHH5261_R3633
6.8
RHH5296_R3662
10.4
Vd2 gdTCR nTPM: 14.5
Samples: 4
Max nTPM: 22.8
Min nTPM: 7.5
RHH5234_R3606
15.8
RHH5206_R3577
7.5
RHH5263_R3635
11.8
RHH5298_R3664
22.8
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
The Human Protein Atlas project is funded
