MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:3.7 nTPM
HPA Brain:11.0 nTPM
GTEx:3.7 nTPM
FANTOM5:26.5 Scaled Tags Per Million
Pig:6.9 nTPM
Mouse:6.3 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 11.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 11.0
2586 Male, age 75, left hemisphere 12.4
2666 Male, age 74, left hemisphere 12.1
2019 Male, age 18, unknown 11.6
1827 Male, age 72, unknown 11.4
2828 Female, age 72, unknown 10.8
2411 Female, age 72, unknown 10.6
2219 Male, age 76, both hemispheres 10.4
1870 Female, age 42, unknown 10.3
1833 Male, age 53, unknown 10.0
1830 Male, age 51, unknown 9.9
Dorsal raphe nucleus
nTPM: 9.9
2047 Male, age 72, unknown 10.3
1828 Male, age 53, unknown 10.1
2750 Male, age 76, both hemispheres 9.8
2016 Female, age 72, unknown 9.7
2298 Female, age 72, unknown 9.4
Inferior colliculus
nTPM: 10.0
2849 Male, age 72, unknown 10.7
1890 Male, age 53, unknown 10.0
1848 Female, age 42, unknown 9.8
2097 Female, age 72, unknown 9.4
Median raphe nucleus
nTPM: 10.0
2220 Male, age 76, midline 10.0
Periaquaductal grey, anterior
nTPM: 9.9
1947 Male, age 18, unknown 10.2
1795 Male, age 51, unknown 10.0
2502 Female, age 75, unknown 9.6
Periaquaductal grey, dorsal
nTPM: 9.5
1831 Male, age 72, unknown 9.7
1840 Male, age 53, unknown 9.6
2850 Male, age 76, both hemispheres 9.6
2464 Female, age 72, unknown 9.3
Periaquaductal grey, lateral
nTPM: 9.6
2140 Male, age 76, both hemispheres 9.7
2272 Male, age 74, both hemispheres 9.6
2053 Male, age 18, unknown 9.4
Pretectal area
nTPM: 10.4
2007 Male, age 72, unknown 11.7
1817 Female, age 42, unknown 11.4
1816 Male, age 51, unknown 11.1
2407 Male, age 75, both hemispheres 11.1
1815 Male, age 53, unknown 10.8
1944 Female, age 72, unknown 10.4
2825 Male, age 18, unknown 10.3
2667 Female, age 75, unknown 10.0
2316 Male, age 76, right hemisphere 9.8
2224 Female, age 72, unknown 9.3
2273 Male, age 74, both hemispheres 9.1
Red nucleus
nTPM: 10.9
2588 Male, age 74, left hemisphere 12.1
2584 Male, age 75, left hemisphere 11.9
2725 Female, age 75, unknown 11.5
1865 Male, age 51, unknown 11.2
1904 Male, age 53, unknown 10.8
2785 Male, age 18, unknown 10.8
2503 Female, age 72, unknown 10.7
2823 Male, age 76, right hemisphere 10.7
1821 Female, age 72, unknown 10.5
1954 Female, age 42, unknown 10.4
2227 Male, age 72, unknown 10.1
2769 Male, age 72, unknown 9.9
Substantia nigra
nTPM: 10.7
2665 Male, age 74, both hemispheres 11.7
1941 Male, age 53, unknown 11.4
2590 Female, age 75, unknown 11.3
2583 Male, age 75, right hemisphere 11.2
1916 Female, age 42, unknown 11.1
1889 Female, age 72, unknown 10.5
1851 Male, age 51, unknown 10.4
2241 Male, age 72, unknown 10.1
2409 Female, age 72, unknown 9.7
2699 Male, age 18, unknown 9.6
Superior colliculus
nTPM: 10.2
2261 Male, age 18, unknown 10.8
2664 Male, age 75, both hemispheres 10.8
2587 Male, age 74, left hemisphere 10.5
1895 Male, age 76, right hemisphere 10.2
1913 Female, age 42, unknown 10.2
1839 Male, age 51, unknown 10.1
2087 Female, age 72, unknown 10.1
1796 Male, age 53, unknown 10.0
2668 Female, age 75, unknown 9.8
1995 Male, age 72, unknown 9.7
Ventral tegmental area
nTPM: 10.0
2410 Female, age 72, unknown 10.5
1942 Male, age 51, unknown 10.4
1915 Female, age 42, unknown 10.1
2021 Male, age 53, unknown 9.8
2223 Female, age 72, unknown 9.6
2218 Male, age 76, both hemispheres 9.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3.7
Samples: 139

Max nTPM: 5.9
Min nTPM: 2.3
Std nTPM: 0.6
Median nTPM: 3.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 5.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 5.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 5.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 5.5
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 5.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 5.2
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 5.1
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 5.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 4.7
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 4.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 26.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 26.5
FF:10158-103A5 76 years, female 26.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 6.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.5
Samples: 4

Max nTPM: 7.1
Min nTPM: 6.1
Sample A Female 6.2
Sample B Female 6.7
Sample C Male 6.1
Sample D Male 7.1
Midbrain
nTPM: 6.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 5.6
Sample A Female 7.7
Sample B Female 5.6
Sample C Male 5.9
Sample D Male 5.8
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.9
Min nTPM: 5.3
Sample B Female 5.9
Sample C Male 5.3
Sample D Male 5.3
Superior colliculi
nTPM: 6.9
Samples: 4

Max nTPM: 8.1
Min nTPM: 6.1
Sample A Female 6.7
Sample B Female 8.1
Sample C Male 6.1
Sample D Male 6.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 6.8
Min nTPM: 5.6
Sample A Male 5.6
Sample B Male 6.6
Sample C Female 6.4
Sample D Female 6.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69133749 Antisense, RP_050321_02_C02, Mouse strain C57BL/6J (56 days, male) 0.3

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