HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: High
Neuronal cells: High
RNA expressioni
Consensus:20.3 nTPM
HPA Brain:88.4 nTPM
GTEx:20.3 nTPM
FANTOM5:62.6 Scaled Tags Per Million
Pig:97.2 nTPM
Mouse:55.5 nTPM
Allen mouse:4.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody CAB016114Antibody CAB069989
Glial cells HighLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 88.4
Sample id Sample description nTPM
Hippocampus
nTPM: 75.4
2148 Female, age 91, left hemisphere 84.2
1911 Female, age 85, right hemisphere 76.0
2621 Female, age 67, right hemisphere 75.3
1898 Male, age 80, left hemisphere 74.0
1855 Male, age 76, left hemisphere 73.9
2529 Female, age 94, left hemisphere 69.1
Dentate gyrus
nTPM: 81.8
2531 Female, age 67, both hemispheres 94.0
2246 Female, age 85, both hemispheres 91.2
1927 Female, age 91, both hemispheres 86.5
2528 Male, age 74, both hemispheres 76.9
2010 Male, age 76, both hemispheres 74.9
2530 Female, age 94, left hemisphere 67.4
Entorhinal gyrus
nTPM: 75.1
1938 Female, age 85, left hemisphere 81.8
2613 Female, age 94, left hemisphere 79.9
1787 Male, age 76, left hemisphere 75.5
2686 Male, age 75, right hemisphere 74.6
2764 Male, age 80, right hemisphere 70.9
2117 Female, age 91, right hemisphere 67.7
Hippocampus, CA1
nTPM: 87.9
2749 Male, age 80, left hemisphere 100.6
2045 Male, age 76, both hemispheres 97.0
2082 Female, age 91, right hemisphere 88.7
1873 Female, age 85, both hemispheres 81.5
2527 Male, age 74, both hemispheres 71.9
Hippocampus, CA2
nTPM: 77.6
1940 Female, age 85, left hemisphere 91.7
2113 Female, age 91, right hemisphere 83.1
1963 Male, age 80, left hemisphere 75.6
1892 Male, age 76, both hemispheres 73.5
2437 Female, age 94, left hemisphere 72.2
2249 Male, age 74, both hemispheres 69.8
Hippocampus, CA3
nTPM: 88.4
2137 Male, age 80, left hemisphere 112.8
2620 Female, age 94, left hemisphere 98.7
2861 Female, age 67, both hemispheres 92.1
1867 Male, age 76, both hemispheres 81.2
1891 Female, age 85, both hemispheres 74.2
2436 Male, age 74, both hemispheres 71.2
Parahippocampal cortex
nTPM: 81.8
2693 Female, age 94, both hemispheres 89.5
1933 Female, age 85, both hemispheres 88.5
2018 Male, age 76, both hemispheres 86.6
2532 Female, age 72, left hemisphere 86.3
2250 Female, age 67, right hemisphere 85.8
2245 Female, age 91, both hemispheres 85.1
2622 Female, age 67, right hemisphere 79.4
1850 Male, age 80, both hemispheres 73.4
1990 Female, age 91, right hemisphere 72.9
2692 Male, age 74, both hemispheres 70.0
Perirhinal gyrus
nTPM: 85.7
2521 Female, age 94, right hemisphere 97.1
1841 Female, age 85, right hemisphere 92.2
1847 Female, age 91, left hemisphere 82.6
1794 Male, age 80, right hemisphere 81.5
2848 Male, age 76, right hemisphere 75.0
Subiculum
nTPM: 77.5
2729 Female, age 91, right hemisphere 86.7
1977 Female, age 85, both hemispheres 84.0
2042 Male, age 76, both hemispheres 76.6
1901 Male, age 80, both hemispheres 76.0
2438 Female, age 94, left hemisphere 71.7
2619 Male, age 74, both hemispheres 70.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.3
Samples: 197

Max nTPM: 32.2
Min nTPM: 12.7
Std nTPM: 3.4
Median nTPM: 19.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 32.2
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 31.6
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 31.1
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 29.7
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 29.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 29.2
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 28.7
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 27.7
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 27.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 27.3
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 27.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 62.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 62.6
FF:10169-103B7 60 years, female 66.4
FF:10153-102I9 76 years, female 58.7

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 97.2
Pig sample Sample description nTPM
Subiculum
nTPM: 89.9
Samples: 4

Max nTPM: 113.8
Min nTPM: 79.5
Sample A Female 113.8
Sample B Female 86.0
Sample C Male 79.5
Sample D Male 80.4
Dorsal hippocampus
nTPM: 89.8
Samples: 4

Max nTPM: 98.5
Min nTPM: 76.2
Sample A Female 95.6
Sample B Female 98.5
Sample C Male 76.2
Sample D Male 89.0
Entorhinal cortex
nTPM: 97.2
Samples: 4

Max nTPM: 107.5
Min nTPM: 87.6
Sample A Female 107.5
Sample B Female 87.8
Sample C Male 106.0
Sample D Male 87.6
Ventral hippocampus
nTPM: 77.2
Samples: 4

Max nTPM: 99.7
Min nTPM: 65.4
Sample A Female 65.4
Sample B Female 67.7
Sample C Male 76.0
Sample D Male 99.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 55.5
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 55.6
Samples: 4

Max nTPM: 63.5
Min nTPM: 50.7
Sample A Male 55.0
Sample B Male 53.0
Sample C Female 50.7
Sample D Female 63.5
Hippocampal formation
nTPM: 53.0
Samples: 4

Max nTPM: 58.8
Min nTPM: 46.6
Sample A Male 48.0
Sample B Male 58.4
Sample C Female 58.8
Sample D Female 46.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 4.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 4.8
556983 Antisense, RP_040825_02_G04, Mouse strain C57BL/6J (56 days, male) 9.6
631727 Antisense, RP_040907_01_C07, Mouse strain C57BL/6J (56 days, male) 0.0

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