MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:14.2 nTPM
HPA Brain:110.4 nTPM
GTEx:14.2 nTPM
FANTOM5:36.0 Scaled Tags Per Million
Pig:87.7 nTPM
Mouse:34.6 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 110.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.2
2019 Male, age 18, unknown 134.6
2586 Male, age 75, left hemisphere 121.5
1827 Male, age 72, unknown 91.8
2828 Female, age 72, unknown 85.2
2411 Female, age 72, unknown 71.6
2666 Male, age 74, left hemisphere 70.9
2219 Male, age 76, both hemispheres 65.7
1833 Male, age 53, unknown 60.7
1870 Female, age 42, unknown 60.2
1830 Male, age 51, unknown 59.9
Dorsal raphe nucleus
nTPM: 74.9
2298 Female, age 72, unknown 90.4
1828 Male, age 53, unknown 80.9
2016 Female, age 72, unknown 77.6
2047 Male, age 72, unknown 67.4
2750 Male, age 76, both hemispheres 58.3
Inferior colliculus
nTPM: 86.6
2097 Female, age 72, unknown 103.6
1848 Female, age 42, unknown 92.0
1890 Male, age 53, unknown 81.8
2849 Male, age 72, unknown 69.0
Median raphe nucleus
nTPM: 70.2
2220 Male, age 76, midline 70.2
Periaquaductal grey, anterior
nTPM: 78.8
2502 Female, age 75, unknown 87.7
1795 Male, age 51, unknown 86.9
1947 Male, age 18, unknown 61.9
Periaquaductal grey, dorsal
nTPM: 80.4
1840 Male, age 53, unknown 94.5
2464 Female, age 72, unknown 88.9
1831 Male, age 72, unknown 79.4
2850 Male, age 76, both hemispheres 58.6
Periaquaductal grey, lateral
nTPM: 68.8
2140 Male, age 76, both hemispheres 71.5
2053 Male, age 18, unknown 70.7
2272 Male, age 74, both hemispheres 64.1
Pretectal area
nTPM: 110.4
1816 Male, age 51, unknown 181.6
1817 Female, age 42, unknown 161.1
2007 Male, age 72, unknown 156.7
1944 Female, age 72, unknown 152.5
1815 Male, age 53, unknown 130.6
2273 Male, age 74, both hemispheres 83.3
2224 Female, age 72, unknown 80.7
2667 Female, age 75, unknown 77.2
2407 Male, age 75, both hemispheres 73.4
2316 Male, age 76, right hemisphere 64.7
2825 Male, age 18, unknown 52.3
Red nucleus
nTPM: 78.8
2785 Male, age 18, unknown 125.6
2503 Female, age 72, unknown 99.7
2588 Male, age 74, left hemisphere 81.4
1954 Female, age 42, unknown 77.1
2725 Female, age 75, unknown 76.9
1904 Male, age 53, unknown 74.1
1821 Female, age 72, unknown 73.6
2227 Male, age 72, unknown 71.2
2584 Male, age 75, left hemisphere 68.4
1865 Male, age 51, unknown 67.0
2769 Male, age 72, unknown 66.8
2823 Male, age 76, right hemisphere 63.5
Substantia nigra
nTPM: 79.6
1889 Female, age 72, unknown 112.0
2583 Male, age 75, right hemisphere 106.9
2665 Male, age 74, both hemispheres 93.5
2590 Female, age 75, unknown 90.5
1851 Male, age 51, unknown 68.9
1941 Male, age 53, unknown 68.4
2409 Female, age 72, unknown 68.3
2241 Male, age 72, unknown 68.0
1916 Female, age 42, unknown 66.4
2699 Male, age 18, unknown 53.3
Superior colliculus
nTPM: 97.3
2087 Female, age 72, unknown 140.4
2261 Male, age 18, unknown 117.7
2664 Male, age 75, both hemispheres 110.5
1995 Male, age 72, unknown 103.1
1796 Male, age 53, unknown 96.3
2668 Female, age 75, unknown 95.6
1913 Female, age 42, unknown 94.6
1895 Male, age 76, right hemisphere 73.6
1839 Male, age 51, unknown 72.3
2587 Male, age 74, left hemisphere 68.5
Ventral tegmental area
nTPM: 70.8
1942 Male, age 51, unknown 79.4
2410 Female, age 72, unknown 78.0
2223 Female, age 72, unknown 70.5
2021 Male, age 53, unknown 66.6
2218 Male, age 76, both hemispheres 66.5
1915 Female, age 42, unknown 63.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.2
Samples: 139

Max nTPM: 32.4
Min nTPM: 6.1
Std nTPM: 5.0
Median nTPM: 13.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 32.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 32.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 30.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 30.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.7
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 28.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 25.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 24.0
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 23.0
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 22.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 22.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.0
FF:10158-103A5 76 years, female 36.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 87.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 70.1
Samples: 4

Max nTPM: 79.7
Min nTPM: 64.6
Sample A Female 64.6
Sample B Female 79.7
Sample C Male 65.7
Sample D Male 70.5
Midbrain
nTPM: 87.8
Samples: 4

Max nTPM: 134.2
Min nTPM: 64.7
Sample A Female 83.7
Sample B Female 64.7
Sample C Male 134.2
Sample D Male 68.4
Periaqueductal gray
nTPM: 65.2
Samples: 3

Max nTPM: 67.0
Min nTPM: 64.0
Sample B Female 67.0
Sample C Male 64.6
Sample D Male 64.0
Superior colliculi
nTPM: 77.3
Samples: 4

Max nTPM: 107.8
Min nTPM: 57.9
Sample A Female 57.9
Sample B Female 70.3
Sample C Male 107.8
Sample D Male 73.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 34.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 34.6
Samples: 4

Max nTPM: 36.3
Min nTPM: 30.8
Sample A Male 30.8
Sample B Male 36.3
Sample C Female 35.3
Sample D Female 36.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69873594 Antisense, RP_050512_01_E12, Mouse strain C57BL/6J (56 days, male) 8.3
71158349 Antisense, RP_050810_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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