HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.9 nTPM
HPA Brain:90.6 nTPM
GTEx:11.9 nTPM
FANTOM5:53.9 Scaled Tags Per Million
Pig:72.8 nTPM
Mouse:39.2 nTPM
Allen mouse:3.8 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 90.6
Sample id Sample description nTPM
Hippocampus
nTPM: 74.0
2529 Female, age 94, left hemisphere 99.7
2148 Female, age 91, left hemisphere 81.9
1898 Male, age 80, left hemisphere 74.4
1911 Female, age 85, right hemisphere 65.7
1855 Male, age 76, left hemisphere 64.8
2621 Female, age 67, right hemisphere 57.4
Dentate gyrus
nTPM: 74.9
2528 Male, age 74, both hemispheres 93.9
2246 Female, age 85, both hemispheres 82.4
2010 Male, age 76, both hemispheres 74.6
2531 Female, age 67, both hemispheres 67.8
2530 Female, age 94, left hemisphere 66.1
1927 Female, age 91, both hemispheres 64.5
Entorhinal gyrus
nTPM: 76.2
1938 Female, age 85, left hemisphere 91.0
2117 Female, age 91, right hemisphere 88.7
2764 Male, age 80, right hemisphere 74.0
1787 Male, age 76, left hemisphere 72.7
2686 Male, age 75, right hemisphere 70.8
2613 Female, age 94, left hemisphere 60.0
Hippocampus, CA1
nTPM: 77.3
2082 Female, age 91, right hemisphere 89.1
1873 Female, age 85, both hemispheres 85.8
2527 Male, age 74, both hemispheres 83.1
2045 Male, age 76, both hemispheres 64.6
2749 Male, age 80, left hemisphere 63.9
Hippocampus, CA2
nTPM: 74.8
2113 Female, age 91, right hemisphere 86.4
2249 Male, age 74, both hemispheres 82.1
1963 Male, age 80, left hemisphere 77.3
1892 Male, age 76, both hemispheres 70.4
2437 Female, age 94, left hemisphere 67.6
1940 Female, age 85, left hemisphere 65.0
Hippocampus, CA3
nTPM: 62.7
2861 Female, age 67, both hemispheres 68.9
2436 Male, age 74, both hemispheres 68.8
1891 Female, age 85, both hemispheres 67.2
2620 Female, age 94, left hemisphere 61.5
1867 Male, age 76, both hemispheres 58.9
2137 Male, age 80, left hemisphere 50.7
Parahippocampal cortex
nTPM: 76.5
1850 Male, age 80, both hemispheres 88.8
1933 Female, age 85, both hemispheres 83.1
2692 Male, age 74, both hemispheres 77.1
2245 Female, age 91, both hemispheres 77.0
2250 Female, age 67, right hemisphere 76.4
2622 Female, age 67, right hemisphere 75.8
2693 Female, age 94, both hemispheres 74.9
1990 Female, age 91, right hemisphere 72.9
2532 Female, age 72, left hemisphere 72.9
2018 Male, age 76, both hemispheres 66.2
Perirhinal gyrus
nTPM: 90.6
1794 Male, age 80, right hemisphere 103.1
1847 Female, age 91, left hemisphere 100.7
1841 Female, age 85, right hemisphere 94.5
2521 Female, age 94, right hemisphere 84.8
2848 Male, age 76, right hemisphere 69.7
Subiculum
nTPM: 71.4
2729 Female, age 91, right hemisphere 94.9
1977 Female, age 85, both hemispheres 84.3
2619 Male, age 74, both hemispheres 78.3
2438 Female, age 94, left hemisphere 70.6
2042 Male, age 76, both hemispheres 51.2
1901 Male, age 80, both hemispheres 48.9

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.9
Samples: 197

Max nTPM: 22.7
Min nTPM: 4.9
Std nTPM: 3.6
Median nTPM: 11.2
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 22.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 21.4
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 21.0
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 20.1
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 20.1
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 19.7
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 19.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 19.2
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 19.1
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 18.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 18.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 53.9
FF:10153-102I9 76 years, female 71.6
FF:10169-103B7 60 years, female 36.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 72.8
Pig sample Sample description nTPM
Subiculum
nTPM: 67.9
Samples: 4

Max nTPM: 77.5
Min nTPM: 59.6
Sample A Female 77.5
Sample B Female 68.2
Sample C Male 59.6
Sample D Male 66.1
Dorsal hippocampus
nTPM: 46.9
Samples: 4

Max nTPM: 49.2
Min nTPM: 43.6
Sample A Female 49.2
Sample B Female 46.0
Sample C Male 48.9
Sample D Male 43.6
Entorhinal cortex
nTPM: 72.8
Samples: 4

Max nTPM: 77.6
Min nTPM: 68.4
Sample A Female 77.6
Sample B Female 68.8
Sample C Male 76.4
Sample D Male 68.4
Ventral hippocampus
nTPM: 46.0
Samples: 4

Max nTPM: 50.5
Min nTPM: 41.7
Sample A Female 41.7
Sample B Female 49.5
Sample C Male 42.1
Sample D Male 50.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 39.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 39.2
Samples: 4

Max nTPM: 45.8
Min nTPM: 35.2
Sample A Male 37.1
Sample B Male 38.6
Sample C Female 35.2
Sample D Female 45.8
Hippocampal formation
nTPM: 22.6
Samples: 4

Max nTPM: 26.2
Min nTPM: 20.6
Sample A Male 26.2
Sample B Male 20.9
Sample C Female 20.6
Sample D Female 22.6

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.8
69873594 Antisense, RP_050512_01_E12, Mouse strain C57BL/6J (56 days, male) 7.5
71158349 Antisense, RP_050810_01_F12, Mouse strain C57BL/6J (56 days, male) 0.0

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