MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:58.9 nTPM
HPA Brain:36.3 nTPM
GTEx:58.9 nTPM
FANTOM5:17.8 Scaled Tags Per Million
Pig:7.5 nTPM
Mouse:9.6 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 36.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 31.0
2666 Male, age 74, left hemisphere 42.9
2828 Female, age 72, unknown 41.6
2586 Male, age 75, left hemisphere 38.3
1870 Female, age 42, unknown 33.6
1830 Male, age 51, unknown 29.3
2411 Female, age 72, unknown 28.3
1833 Male, age 53, unknown 26.5
2019 Male, age 18, unknown 26.3
1827 Male, age 72, unknown 25.4
2219 Male, age 76, both hemispheres 18.0
Dorsal raphe nucleus
nTPM: 31.9
1828 Male, age 53, unknown 43.0
2047 Male, age 72, unknown 35.6
2016 Female, age 72, unknown 31.8
2750 Male, age 76, both hemispheres 27.6
2298 Female, age 72, unknown 21.3
Inferior colliculus
nTPM: 24.9
1848 Female, age 42, unknown 27.4
2849 Male, age 72, unknown 26.0
1890 Male, age 53, unknown 23.9
2097 Female, age 72, unknown 22.6
Median raphe nucleus
nTPM: 20.4
2220 Male, age 76, midline 20.4
Periaquaductal grey, anterior
nTPM: 24.1
1795 Male, age 51, unknown 27.1
2502 Female, age 75, unknown 24.2
1947 Male, age 18, unknown 21.0
Periaquaductal grey, dorsal
nTPM: 25.0
1831 Male, age 72, unknown 27.0
2464 Female, age 72, unknown 25.1
2850 Male, age 76, both hemispheres 24.7
1840 Male, age 53, unknown 23.3
Periaquaductal grey, lateral
nTPM: 25.9
2053 Male, age 18, unknown 34.0
2140 Male, age 76, both hemispheres 23.2
2272 Male, age 74, both hemispheres 20.3
Pretectal area
nTPM: 22.2
2825 Male, age 18, unknown 28.1
1817 Female, age 42, unknown 25.1
1815 Male, age 53, unknown 23.2
2316 Male, age 76, right hemisphere 22.9
2667 Female, age 75, unknown 22.7
2273 Male, age 74, both hemispheres 22.1
1944 Female, age 72, unknown 20.8
2224 Female, age 72, unknown 20.7
2407 Male, age 75, both hemispheres 20.3
2007 Male, age 72, unknown 19.5
1816 Male, age 51, unknown 18.6
Red nucleus
nTPM: 36.3
2823 Male, age 76, right hemisphere 45.3
2503 Female, age 72, unknown 41.6
1954 Female, age 42, unknown 39.5
1865 Male, age 51, unknown 37.6
2588 Male, age 74, left hemisphere 37.6
2769 Male, age 72, unknown 37.5
2227 Male, age 72, unknown 36.8
1821 Female, age 72, unknown 35.7
2725 Female, age 75, unknown 34.8
1904 Male, age 53, unknown 33.0
2584 Male, age 75, left hemisphere 28.8
2785 Male, age 18, unknown 27.9
Substantia nigra
nTPM: 27.5
2699 Male, age 18, unknown 34.1
1851 Male, age 51, unknown 31.4
2409 Female, age 72, unknown 31.4
1941 Male, age 53, unknown 27.5
2583 Male, age 75, right hemisphere 26.5
2590 Female, age 75, unknown 26.4
2665 Male, age 74, both hemispheres 26.4
1916 Female, age 42, unknown 25.9
1889 Female, age 72, unknown 23.4
2241 Male, age 72, unknown 21.4
Superior colliculus
nTPM: 27.3
1913 Female, age 42, unknown 34.1
1995 Male, age 72, unknown 33.3
2664 Male, age 75, both hemispheres 29.9
2587 Male, age 74, left hemisphere 29.8
2668 Female, age 75, unknown 27.8
1796 Male, age 53, unknown 26.1
1839 Male, age 51, unknown 24.1
1895 Male, age 76, right hemisphere 23.9
2087 Female, age 72, unknown 22.7
2261 Male, age 18, unknown 21.1
Ventral tegmental area
nTPM: 30.1
2223 Female, age 72, unknown 37.8
1915 Female, age 42, unknown 30.8
2410 Female, age 72, unknown 30.5
1942 Male, age 51, unknown 29.8
2021 Male, age 53, unknown 28.9
2218 Male, age 76, both hemispheres 22.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 58.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 58.9
Samples: 139

Max nTPM: 142.5
Min nTPM: 14.1
Std nTPM: 26.1
Median nTPM: 53.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 142.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 140.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 136.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 131.0
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 129.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 127.7
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 114.6
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 106.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 106.0
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 103.0
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 102.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 17.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.8
FF:10158-103A5 76 years, female 17.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 7.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 6.1
Samples: 4

Max nTPM: 8.2
Min nTPM: 4.6
Sample A Female 6.6
Sample B Female 4.6
Sample C Male 5.1
Sample D Male 8.2
Midbrain
nTPM: 7.2
Samples: 4

Max nTPM: 15.9
Min nTPM: 3.7
Sample A Female 15.9
Sample B Female 4.9
Sample C Male 4.3
Sample D Male 3.7
Periaqueductal gray
nTPM: 3.8
Samples: 3

Max nTPM: 4.1
Min nTPM: 3.6
Sample B Female 4.1
Sample C Male 3.7
Sample D Male 3.6
Superior colliculi
nTPM: 7.5
Samples: 4

Max nTPM: 12.5
Min nTPM: 5.4
Sample A Female 6.5
Sample B Female 12.5
Sample C Male 5.7
Sample D Male 5.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.7
Samples: 4

Max nTPM: 11.3
Min nTPM: 7.8
Sample A Male 11.3
Sample B Male 10.2
Sample C Female 7.8
Sample D Female 9.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68443363 Antisense, RP_050111_01_H02, Mouse strain C57BL/6J (56 days, male) 1.4

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