MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.8 nTPM
HPA Brain:218.4 nTPM
GTEx:9.8 nTPM
FANTOM5:129.1 Scaled Tags Per Million
Pig:10.7 nTPM
Mouse:2.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 218.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 177.1
1833 Male, age 53, unknown 254.7
1830 Male, age 51, unknown 233.8
2019 Male, age 18, unknown 192.0
2666 Male, age 74, left hemisphere 175.9
2828 Female, age 72, unknown 174.3
1870 Female, age 42, unknown 173.1
2411 Female, age 72, unknown 152.3
2586 Male, age 75, left hemisphere 151.5
2219 Male, age 76, both hemispheres 143.4
1827 Male, age 72, unknown 120.2
Dorsal raphe nucleus
nTPM: 130.2
2750 Male, age 76, both hemispheres 188.0
1828 Male, age 53, unknown 146.3
2016 Female, age 72, unknown 138.5
2047 Male, age 72, unknown 100.7
2298 Female, age 72, unknown 77.5
Inferior colliculus
nTPM: 124.9
2849 Male, age 72, unknown 165.0
1848 Female, age 42, unknown 127.6
1890 Male, age 53, unknown 121.5
2097 Female, age 72, unknown 85.4
Median raphe nucleus
nTPM: 101.8
2220 Male, age 76, midline 101.8
Periaquaductal grey, anterior
nTPM: 120.8
1947 Male, age 18, unknown 134.1
2502 Female, age 75, unknown 127.9
1795 Male, age 51, unknown 100.4
Periaquaductal grey, dorsal
nTPM: 121.7
2850 Male, age 76, both hemispheres 163.1
2464 Female, age 72, unknown 144.0
1831 Male, age 72, unknown 103.7
1840 Male, age 53, unknown 76.0
Periaquaductal grey, lateral
nTPM: 145.4
2140 Male, age 76, both hemispheres 184.7
2272 Male, age 74, both hemispheres 126.6
2053 Male, age 18, unknown 124.8
Pretectal area
nTPM: 137.5
2316 Male, age 76, right hemisphere 223.3
2667 Female, age 75, unknown 179.0
1815 Male, age 53, unknown 160.6
2407 Male, age 75, both hemispheres 151.9
2825 Male, age 18, unknown 132.0
1817 Female, age 42, unknown 127.5
2224 Female, age 72, unknown 126.0
2007 Male, age 72, unknown 116.8
2273 Male, age 74, both hemispheres 108.6
1944 Female, age 72, unknown 101.4
1816 Male, age 51, unknown 85.5
Red nucleus
nTPM: 218.4
2823 Male, age 76, right hemisphere 322.6
1865 Male, age 51, unknown 251.4
1904 Male, age 53, unknown 250.3
2227 Male, age 72, unknown 238.2
2769 Male, age 72, unknown 216.0
1821 Female, age 72, unknown 207.4
2785 Male, age 18, unknown 203.1
2503 Female, age 72, unknown 202.6
2588 Male, age 74, left hemisphere 199.8
1954 Female, age 42, unknown 199.7
2725 Female, age 75, unknown 177.3
2584 Male, age 75, left hemisphere 152.8
Substantia nigra
nTPM: 142.9
2409 Female, age 72, unknown 194.4
2699 Male, age 18, unknown 183.4
2241 Male, age 72, unknown 161.0
2583 Male, age 75, right hemisphere 152.8
1851 Male, age 51, unknown 137.0
2590 Female, age 75, unknown 134.4
1889 Female, age 72, unknown 127.4
1941 Male, age 53, unknown 119.9
2665 Male, age 74, both hemispheres 115.2
1916 Female, age 42, unknown 103.4
Superior colliculus
nTPM: 150.9
1913 Female, age 42, unknown 237.1
1895 Male, age 76, right hemisphere 207.3
1995 Male, age 72, unknown 189.9
1839 Male, age 51, unknown 166.9
2587 Male, age 74, left hemisphere 133.8
2668 Female, age 75, unknown 127.6
2664 Male, age 75, both hemispheres 117.0
1796 Male, age 53, unknown 116.5
2261 Male, age 18, unknown 108.9
2087 Female, age 72, unknown 104.0
Ventral tegmental area
nTPM: 146.9
2218 Male, age 76, both hemispheres 173.6
2223 Female, age 72, unknown 158.5
1942 Male, age 51, unknown 152.1
2410 Female, age 72, unknown 137.8
2021 Male, age 53, unknown 133.7
1915 Female, age 42, unknown 125.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.8
Samples: 139

Max nTPM: 29.8
Min nTPM: 2.9
Std nTPM: 3.7
Median nTPM: 9.3
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 29.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 21.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 18.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 17.8
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 17.0
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 16.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.6
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 15.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 15.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 15.6
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 15.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 129.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 129.1
FF:10158-103A5 76 years, female 129.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 4.3
Samples: 4

Max nTPM: 7.7
Min nTPM: 2.1
Sample A Female 3.1
Sample B Female 7.7
Sample C Male 2.1
Sample D Male 4.4
Midbrain
nTPM: 2.8
Samples: 4

Max nTPM: 4.3
Min nTPM: 2.0
Sample A Female 4.3
Sample B Female 2.5
Sample C Male 2.3
Sample D Male 2.0
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 3.3
Min nTPM: 2.5
Sample B Female 2.8
Sample C Male 2.5
Sample D Male 3.3
Superior colliculi
nTPM: 10.7
Samples: 4

Max nTPM: 31.4
Min nTPM: 1.5
Sample A Female 7.2
Sample B Female 31.4
Sample C Male 1.5
Sample D Male 2.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 2.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.6
Samples: 4

Max nTPM: 3.4
Min nTPM: 2.1
Sample A Male 3.4
Sample B Male 2.1
Sample C Female 2.5
Sample D Female 2.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
75990492 Antisense, RP_060608_01_C04, Mouse strain C57BL/6J (56 days, male) 0.2

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