HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni
Consensus:26.8 nTPM
HPA Brain:22.3 nTPM
GTEx:26.8 nTPM
FANTOM5:15.8 Scaled Tags Per Million
Pig:38.6 nTPM
Mouse:43.9 nTPM
Allen mouse:1.3 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA043837
Glial cells Not detected
Neuronal cells Medium


HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 22.3
Sample id Sample description nTPM
Hippocampus
nTPM: 22.3
1898 Male, age 80, left hemisphere 25.8
2621 Female, age 67, right hemisphere 23.1
1855 Male, age 76, left hemisphere 22.8
2529 Female, age 94, left hemisphere 22.7
1911 Female, age 85, right hemisphere 20.0
2148 Female, age 91, left hemisphere 19.6
Dentate gyrus
nTPM: 20.1
2530 Female, age 94, left hemisphere 24.1
2010 Male, age 76, both hemispheres 22.5
2246 Female, age 85, both hemispheres 20.0
2528 Male, age 74, both hemispheres 18.9
1927 Female, age 91, both hemispheres 17.7
2531 Female, age 67, both hemispheres 17.6
Entorhinal gyrus
nTPM: 20.8
2117 Female, age 91, right hemisphere 22.7
1938 Female, age 85, left hemisphere 21.9
2686 Male, age 75, right hemisphere 20.8
2764 Male, age 80, right hemisphere 20.6
2613 Female, age 94, left hemisphere 20.1
1787 Male, age 76, left hemisphere 18.7
Hippocampus, CA1
nTPM: 22.1
2749 Male, age 80, left hemisphere 26.9
2045 Male, age 76, both hemispheres 23.2
1873 Female, age 85, both hemispheres 21.6
2082 Female, age 91, right hemisphere 19.9
2527 Male, age 74, both hemispheres 18.8
Hippocampus, CA2
nTPM: 22.1
1892 Male, age 76, both hemispheres 26.0
1963 Male, age 80, left hemisphere 23.9
2249 Male, age 74, both hemispheres 22.6
1940 Female, age 85, left hemisphere 21.2
2437 Female, age 94, left hemisphere 19.6
2113 Female, age 91, right hemisphere 19.3
Hippocampus, CA3
nTPM: 21.8
1867 Male, age 76, both hemispheres 24.9
2137 Male, age 80, left hemisphere 24.1
2861 Female, age 67, both hemispheres 21.8
2436 Male, age 74, both hemispheres 21.6
2620 Female, age 94, left hemisphere 19.7
1891 Female, age 85, both hemispheres 18.7
Parahippocampal cortex
nTPM: 19.1
2245 Female, age 91, both hemispheres 21.7
2250 Female, age 67, right hemisphere 21.3
1850 Male, age 80, both hemispheres 21.2
2018 Male, age 76, both hemispheres 21.2
1933 Female, age 85, both hemispheres 18.3
2692 Male, age 74, both hemispheres 18.3
1990 Female, age 91, right hemisphere 18.2
2693 Female, age 94, both hemispheres 17.7
2532 Female, age 72, left hemisphere 17.4
2622 Female, age 67, right hemisphere 15.5
Perirhinal gyrus
nTPM: 19.4
1847 Female, age 91, left hemisphere 21.6
1794 Male, age 80, right hemisphere 20.3
1841 Female, age 85, right hemisphere 19.5
2521 Female, age 94, right hemisphere 19.0
2848 Male, age 76, right hemisphere 16.7
Subiculum
nTPM: 21.3
2042 Male, age 76, both hemispheres 25.9
1901 Male, age 80, both hemispheres 21.3
2619 Male, age 74, both hemispheres 20.9
2438 Female, age 94, left hemisphere 20.4
2729 Female, age 91, right hemisphere 20.1
1977 Female, age 85, both hemispheres 19.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.8
Samples: 197

Max nTPM: 57.1
Min nTPM: 15.5
Std nTPM: 5.0
Median nTPM: 26.4
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 57.1
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 44.5
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 42.4
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 38.6
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 37.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 36.8
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 36.0
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 35.6
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 35.4
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 35.2
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 34.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.8
FF:10169-103B7 60 years, female 19.7
FF:10153-102I9 76 years, female 11.8

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 38.6
Pig sample Sample description nTPM
Subiculum
nTPM: 30.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 26.3
Sample A Female 39.0
Sample B Female 26.5
Sample C Male 31.0
Sample D Male 26.3
Dorsal hippocampus
nTPM: 38.6
Samples: 4

Max nTPM: 48.7
Min nTPM: 34.0
Sample A Female 48.7
Sample B Female 35.3
Sample C Male 36.2
Sample D Male 34.0
Entorhinal cortex
nTPM: 30.8
Samples: 4

Max nTPM: 34.7
Min nTPM: 28.6
Sample A Female 34.7
Sample B Female 29.9
Sample C Male 29.8
Sample D Male 28.6
Ventral hippocampus
nTPM: 34.3
Samples: 4

Max nTPM: 40.0
Min nTPM: 23.8
Sample A Female 33.5
Sample B Female 23.8
Sample C Male 40.0
Sample D Male 39.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 43.9
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 41.5
Samples: 4

Max nTPM: 50.0
Min nTPM: 37.3
Sample A Male 37.3
Sample B Male 40.7
Sample C Female 50.0
Sample D Female 37.8
Hippocampal formation
nTPM: 44.0
Samples: 4

Max nTPM: 46.6
Min nTPM: 41.4
Sample A Male 46.6
Sample B Male 41.4
Sample C Female 45.1
Sample D Female 42.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 1.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.3
632486 Antisense, RP_040907_01_D04, Mouse strain C57BL/6J (56 days, male) 1.3

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