MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.2 nTPM
HPA Brain:5.5 nTPM
GTEx:7.2 nTPM
FANTOM5:31.3 Scaled Tags Per Million
Pig:10.3 nTPM
Mouse:49.5 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 5.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 2.6
2828 Female, age 72, unknown 3.5
1830 Male, age 51, unknown 3.4
2219 Male, age 76, both hemispheres 3.3
2411 Female, age 72, unknown 3.3
1833 Male, age 53, unknown 3.2
1870 Female, age 42, unknown 2.6
2019 Male, age 18, unknown 2.5
1827 Male, age 72, unknown 1.8
2586 Male, age 75, left hemisphere 1.4
2666 Male, age 74, left hemisphere 1.0
Dorsal raphe nucleus
nTPM: 3.9
2298 Female, age 72, unknown 6.2
2016 Female, age 72, unknown 4.8
1828 Male, age 53, unknown 3.2
2047 Male, age 72, unknown 2.8
2750 Male, age 76, both hemispheres 2.5
Inferior colliculus
nTPM: 3.3
2097 Female, age 72, unknown 4.5
1890 Male, age 53, unknown 3.4
1848 Female, age 42, unknown 2.8
2849 Male, age 72, unknown 2.4
Median raphe nucleus
nTPM: 2.3
2220 Male, age 76, midline 2.3
Periaquaductal grey, anterior
nTPM: 3.8
1795 Male, age 51, unknown 4.5
2502 Female, age 75, unknown 3.5
1947 Male, age 18, unknown 3.3
Periaquaductal grey, dorsal
nTPM: 4.0
1831 Male, age 72, unknown 4.8
1840 Male, age 53, unknown 3.8
2850 Male, age 76, both hemispheres 3.8
2464 Female, age 72, unknown 3.7
Periaquaductal grey, lateral
nTPM: 5.5
2272 Male, age 74, both hemispheres 8.8
2053 Male, age 18, unknown 4.1
2140 Male, age 76, both hemispheres 3.8
Pretectal area
nTPM: 3.8
2273 Male, age 74, both hemispheres 8.5
2316 Male, age 76, right hemisphere 6.5
2224 Female, age 72, unknown 5.5
2667 Female, age 75, unknown 3.7
2007 Male, age 72, unknown 3.2
1815 Male, age 53, unknown 3.0
1816 Male, age 51, unknown 2.8
1817 Female, age 42, unknown 2.8
2825 Male, age 18, unknown 2.7
1944 Female, age 72, unknown 2.3
2407 Male, age 75, both hemispheres 1.2
Red nucleus
nTPM: 2.6
1865 Male, age 51, unknown 3.8
1904 Male, age 53, unknown 3.5
2769 Male, age 72, unknown 3.3
2503 Female, age 72, unknown 3.1
2227 Male, age 72, unknown 2.7
2785 Male, age 18, unknown 2.6
2823 Male, age 76, right hemisphere 2.6
1821 Female, age 72, unknown 2.3
1954 Female, age 42, unknown 2.2
2588 Male, age 74, left hemisphere 2.0
2584 Male, age 75, left hemisphere 1.4
2725 Female, age 75, unknown 1.4
Substantia nigra
nTPM: 4.6
2409 Female, age 72, unknown 9.8
2590 Female, age 75, unknown 7.7
2699 Male, age 18, unknown 5.7
2241 Male, age 72, unknown 5.1
1851 Male, age 51, unknown 4.4
1916 Female, age 42, unknown 3.4
1941 Male, age 53, unknown 2.8
2583 Male, age 75, right hemisphere 2.4
2665 Male, age 74, both hemispheres 2.4
1889 Female, age 72, unknown 2.3
Superior colliculus
nTPM: 3.5
2587 Male, age 74, left hemisphere 6.5
1913 Female, age 42, unknown 5.2
2261 Male, age 18, unknown 4.3
1995 Male, age 72, unknown 3.9
2087 Female, age 72, unknown 3.8
1839 Male, age 51, unknown 2.9
2668 Female, age 75, unknown 2.7
1796 Male, age 53, unknown 2.2
1895 Male, age 76, right hemisphere 2.1
2664 Male, age 75, both hemispheres 1.6
Ventral tegmental area
nTPM: 4.3
2021 Male, age 53, unknown 6.5
2410 Female, age 72, unknown 5.2
1915 Female, age 42, unknown 4.8
2218 Male, age 76, both hemispheres 3.7
2223 Female, age 72, unknown 3.6
1942 Male, age 51, unknown 2.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.2
Samples: 139

Max nTPM: 35.9
Min nTPM: 0.2
Std nTPM: 6.5
Median nTPM: 5.4
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 35.9
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 31.8
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 30.4
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 29.4
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 28.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 23.6
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 22.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 20.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 18.8
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 18.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 17.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 31.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 31.3
FF:10158-103A5 76 years, female 31.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 10.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.7
Samples: 4

Max nTPM: 12.8
Min nTPM: 5.9
Sample A Female 5.9
Sample B Female 11.3
Sample C Male 8.9
Sample D Male 12.8
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 11.0
Min nTPM: 6.6
Sample A Female 6.6
Sample B Female 11.0
Sample C Male 7.9
Sample D Male 10.8
Periaqueductal gray
nTPM: 10.4
Samples: 3

Max nTPM: 12.1
Min nTPM: 8.2
Sample B Female 10.8
Sample C Male 8.2
Sample D Male 12.1
Superior colliculi
nTPM: 8.0
Samples: 4

Max nTPM: 9.5
Min nTPM: 5.5
Sample A Female 5.5
Sample B Female 9.5
Sample C Male 7.9
Sample D Male 9.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.5
Samples: 4

Max nTPM: 52.8
Min nTPM: 47.4
Sample A Male 49.8
Sample B Male 47.4
Sample C Female 52.8
Sample D Female 48.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68499255 Antisense, RP_050118_01_C01, Mouse strain C57BL/6J (56 days, male) 0.0

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