MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:30.4 nTPM
GTEx:34.9 nTPM
FANTOM5:24.5 Scaled Tags Per Million
Pig:30.2 nTPM
Mouse:49.6 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 30.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 15.0
2411 Female, age 72, unknown 22.8
2219 Male, age 76, both hemispheres 20.6
1870 Female, age 42, unknown 19.1
1833 Male, age 53, unknown 17.8
1830 Male, age 51, unknown 15.6
1827 Male, age 72, unknown 13.4
2019 Male, age 18, unknown 12.6
2828 Female, age 72, unknown 10.5
2666 Male, age 74, left hemisphere 9.7
2586 Male, age 75, left hemisphere 7.9
Dorsal raphe nucleus
nTPM: 21.8
2750 Male, age 76, both hemispheres 26.1
2047 Male, age 72, unknown 24.5
2298 Female, age 72, unknown 22.3
1828 Male, age 53, unknown 19.5
2016 Female, age 72, unknown 16.6
Inferior colliculus
nTPM: 16.2
1848 Female, age 42, unknown 16.8
2097 Female, age 72, unknown 16.6
2849 Male, age 72, unknown 15.8
1890 Male, age 53, unknown 15.6
Median raphe nucleus
nTPM: 30.4
2220 Male, age 76, midline 30.4
Periaquaductal grey, anterior
nTPM: 14.6
1947 Male, age 18, unknown 19.0
2502 Female, age 75, unknown 14.9
1795 Male, age 51, unknown 10.0
Periaquaductal grey, dorsal
nTPM: 15.9
1840 Male, age 53, unknown 18.2
2464 Female, age 72, unknown 17.8
2850 Male, age 76, both hemispheres 17.4
1831 Male, age 72, unknown 10.2
Periaquaductal grey, lateral
nTPM: 13.2
2272 Male, age 74, both hemispheres 13.8
2140 Male, age 76, both hemispheres 13.1
2053 Male, age 18, unknown 12.7
Pretectal area
nTPM: 13.5
2224 Female, age 72, unknown 21.0
2825 Male, age 18, unknown 16.1
2667 Female, age 75, unknown 15.2
2273 Male, age 74, both hemispheres 14.2
1817 Female, age 42, unknown 14.1
2007 Male, age 72, unknown 13.5
2316 Male, age 76, right hemisphere 12.9
1815 Male, age 53, unknown 11.7
1816 Male, age 51, unknown 10.0
1944 Female, age 72, unknown 9.9
2407 Male, age 75, both hemispheres 9.6
Red nucleus
nTPM: 14.9
1821 Female, age 72, unknown 23.0
2823 Male, age 76, right hemisphere 16.5
2769 Male, age 72, unknown 15.8
1904 Male, age 53, unknown 15.5
2227 Male, age 72, unknown 15.4
1865 Male, age 51, unknown 14.6
2725 Female, age 75, unknown 14.3
1954 Female, age 42, unknown 13.9
2503 Female, age 72, unknown 13.8
2584 Male, age 75, left hemisphere 13.0
2588 Male, age 74, left hemisphere 12.1
2785 Male, age 18, unknown 10.9
Substantia nigra
nTPM: 20.4
2241 Male, age 72, unknown 39.7
1916 Female, age 42, unknown 28.0
1851 Male, age 51, unknown 23.1
2699 Male, age 18, unknown 19.7
1941 Male, age 53, unknown 19.3
1889 Female, age 72, unknown 17.9
2409 Female, age 72, unknown 16.9
2590 Female, age 75, unknown 14.8
2665 Male, age 74, both hemispheres 13.6
2583 Male, age 75, right hemisphere 10.6
Superior colliculus
nTPM: 12.4
1895 Male, age 76, right hemisphere 21.3
1839 Male, age 51, unknown 16.5
2587 Male, age 74, left hemisphere 16.0
2668 Female, age 75, unknown 12.9
2087 Female, age 72, unknown 11.5
1796 Male, age 53, unknown 11.3
2261 Male, age 18, unknown 10.9
1913 Female, age 42, unknown 10.0
1995 Male, age 72, unknown 6.7
2664 Male, age 75, both hemispheres 6.6
Ventral tegmental area
nTPM: 19.4
1915 Female, age 42, unknown 21.8
2410 Female, age 72, unknown 20.7
2218 Male, age 76, both hemispheres 19.5
1942 Male, age 51, unknown 19.3
2223 Female, age 72, unknown 18.4
2021 Male, age 53, unknown 16.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 139

Max nTPM: 94.3
Min nTPM: 9.0
Std nTPM: 14.9
Median nTPM: 34.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 73.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 72.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 68.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.1
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 62.8
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 59.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 59.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 58.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 57.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 56.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.5
FF:10158-103A5 76 years, female 24.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 30.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 30.2
Samples: 4

Max nTPM: 33.4
Min nTPM: 25.3
Sample A Female 25.3
Sample B Female 33.4
Sample C Male 31.7
Sample D Male 30.4
Midbrain
nTPM: 28.0
Samples: 4

Max nTPM: 33.1
Min nTPM: 25.1
Sample A Female 28.2
Sample B Female 25.1
Sample C Male 33.1
Sample D Male 25.4
Periaqueductal gray
nTPM: 29.7
Samples: 3

Max nTPM: 31.2
Min nTPM: 26.7
Sample B Female 31.2
Sample C Male 31.2
Sample D Male 26.7
Superior colliculi
nTPM: 26.3
Samples: 4

Max nTPM: 31.7
Min nTPM: 21.9
Sample A Female 29.6
Sample B Female 21.9
Sample C Male 31.7
Sample D Male 22.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 49.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 49.6
Samples: 4

Max nTPM: 53.1
Min nTPM: 45.8
Sample A Male 53.1
Sample B Male 49.4
Sample C Female 45.8
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
68148753 Antisense, RP_041116_02_B05, Mouse strain C57BL/6J (56 days, male) 0.0

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