HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni
Consensus:11.8 nTPM
HPA Brain:31.4 nTPM
GTEx:11.8 nTPM
FANTOM5:19.6 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:44.4 nTPM
Allen mouse:2.8 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA041012
Glial cells Low
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 31.4
Sample id Sample description nTPM
Hippocampus
nTPM: 28.5
2529 Female, age 94, left hemisphere 29.8
2148 Female, age 91, left hemisphere 29.4
1911 Female, age 85, right hemisphere 29.3
1898 Male, age 80, left hemisphere 28.7
2621 Female, age 67, right hemisphere 27.4
1855 Male, age 76, left hemisphere 26.3
Dentate gyrus
nTPM: 29.6
2531 Female, age 67, both hemispheres 31.4
2246 Female, age 85, both hemispheres 30.6
2528 Male, age 74, both hemispheres 30.1
2530 Female, age 94, left hemisphere 30.1
1927 Female, age 91, both hemispheres 28.3
2010 Male, age 76, both hemispheres 27.3
Entorhinal gyrus
nTPM: 31.2
2764 Male, age 80, right hemisphere 34.4
1938 Female, age 85, left hemisphere 31.4
2686 Male, age 75, right hemisphere 31.4
2613 Female, age 94, left hemisphere 30.8
2117 Female, age 91, right hemisphere 30.6
1787 Male, age 76, left hemisphere 28.6
Hippocampus, CA1
nTPM: 29.7
2749 Male, age 80, left hemisphere 34.0
2082 Female, age 91, right hemisphere 31.7
2527 Male, age 74, both hemispheres 29.6
1873 Female, age 85, both hemispheres 29.1
2045 Male, age 76, both hemispheres 24.3
Hippocampus, CA2
nTPM: 30.4
1940 Female, age 85, left hemisphere 32.4
2113 Female, age 91, right hemisphere 31.5
1963 Male, age 80, left hemisphere 31.4
2249 Male, age 74, both hemispheres 31.0
2437 Female, age 94, left hemisphere 29.7
1892 Male, age 76, both hemispheres 26.5
Hippocampus, CA3
nTPM: 30.9
2620 Female, age 94, left hemisphere 34.5
2137 Male, age 80, left hemisphere 33.5
2436 Male, age 74, both hemispheres 31.8
1891 Female, age 85, both hemispheres 30.7
2861 Female, age 67, both hemispheres 30.4
1867 Male, age 76, both hemispheres 24.2
Parahippocampal cortex
nTPM: 30.5
2532 Female, age 72, left hemisphere 33.6
1850 Male, age 80, both hemispheres 32.9
1990 Female, age 91, right hemisphere 31.4
2693 Female, age 94, both hemispheres 30.6
2622 Female, age 67, right hemisphere 30.5
2692 Male, age 74, both hemispheres 30.5
2250 Female, age 67, right hemisphere 30.3
1933 Female, age 85, both hemispheres 30.0
2245 Female, age 91, both hemispheres 29.0
2018 Male, age 76, both hemispheres 26.4
Perirhinal gyrus
nTPM: 31.4
2521 Female, age 94, right hemisphere 34.9
1794 Male, age 80, right hemisphere 32.3
1841 Female, age 85, right hemisphere 31.2
1847 Female, age 91, left hemisphere 29.7
2848 Male, age 76, right hemisphere 28.9
Subiculum
nTPM: 30.0
1977 Female, age 85, both hemispheres 31.5
2042 Male, age 76, both hemispheres 31.5
1901 Male, age 80, both hemispheres 30.6
2438 Female, age 94, left hemisphere 29.8
2729 Female, age 91, right hemisphere 28.7
2619 Male, age 74, both hemispheres 28.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 11.8
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 11.8
Samples: 197

Max nTPM: 26.7
Min nTPM: 6.2
Std nTPM: 2.2
Median nTPM: 11.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 26.7
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 20.2
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 19.8
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 17.3
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 16.7
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 16.7
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 16.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 15.9
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 15.8
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 15.7
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 15.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 19.6
FF:10153-102I9 76 years, female 20.5
FF:10169-103B7 60 years, female 18.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 19.1
Pig sample Sample description nTPM
Subiculum
nTPM: 18.8
Samples: 4

Max nTPM: 22.8
Min nTPM: 16.5
Sample A Female 22.8
Sample B Female 18.0
Sample C Male 18.0
Sample D Male 16.5
Dorsal hippocampus
nTPM: 19.0
Samples: 4

Max nTPM: 21.9
Min nTPM: 15.9
Sample A Female 21.9
Sample B Female 20.7
Sample C Male 17.6
Sample D Male 15.9
Entorhinal cortex
nTPM: 19.1
Samples: 4

Max nTPM: 20.6
Min nTPM: 17.3
Sample A Female 20.6
Sample B Female 19.7
Sample C Male 18.8
Sample D Male 17.3
Ventral hippocampus
nTPM: 18.4
Samples: 4

Max nTPM: 21.3
Min nTPM: 14.4
Sample A Female 18.0
Sample B Female 14.4
Sample C Male 21.3
Sample D Male 19.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 44.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 44.3
Samples: 4

Max nTPM: 52.3
Min nTPM: 39.4
Sample A Male 43.7
Sample B Male 41.9
Sample C Female 39.4
Sample D Female 52.3
Hippocampal formation
nTPM: 37.3
Samples: 4

Max nTPM: 38.2
Min nTPM: 36.8
Sample A Male 37.2
Sample B Male 36.8
Sample C Female 36.8
Sample D Female 38.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 2.8
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 2.8
67815937 Antisense, RP_040920_02_B01, Mouse strain C57BL/6J (56 days, male) 2.8

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