MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.5 nTPM
HPA Brain:47.6 nTPM
GTEx:9.5 nTPM
FANTOM5:6.0 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:25.3 nTPM
Allen mouse:2.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
2219 Male, age 76, both hemispheres 40.8
2019 Male, age 18, unknown 30.1
2666 Male, age 74, left hemisphere 29.3
2411 Female, age 72, unknown 18.7
1870 Female, age 42, unknown 14.4
1827 Male, age 72, unknown 14.2
2586 Male, age 75, left hemisphere 13.4
1833 Male, age 53, unknown 13.1
2828 Female, age 72, unknown 12.8
1830 Male, age 51, unknown 10.9
Dorsal raphe nucleus
nTPM: 24.1
2298 Female, age 72, unknown 35.7
2750 Male, age 76, both hemispheres 34.6
2047 Male, age 72, unknown 29.9
2016 Female, age 72, unknown 10.5
1828 Male, age 53, unknown 9.7
Inferior colliculus
nTPM: 14.0
1890 Male, age 53, unknown 17.8
2097 Female, age 72, unknown 17.8
1848 Female, age 42, unknown 11.2
2849 Male, age 72, unknown 9.1
Median raphe nucleus
nTPM: 41.4
2220 Male, age 76, midline 41.4
Periaquaductal grey, anterior
nTPM: 23.6
1795 Male, age 51, unknown 28.5
2502 Female, age 75, unknown 21.7
1947 Male, age 18, unknown 20.6
Periaquaductal grey, dorsal
nTPM: 20.2
1840 Male, age 53, unknown 24.3
1831 Male, age 72, unknown 23.0
2850 Male, age 76, both hemispheres 17.9
2464 Female, age 72, unknown 15.4
Periaquaductal grey, lateral
nTPM: 14.3
2053 Male, age 18, unknown 15.3
2272 Male, age 74, both hemispheres 15.1
2140 Male, age 76, both hemispheres 12.4
Pretectal area
nTPM: 35.6
1944 Female, age 72, unknown 65.9
1815 Male, age 53, unknown 56.7
1817 Female, age 42, unknown 54.2
1816 Male, age 51, unknown 54.0
2007 Male, age 72, unknown 52.6
2667 Female, age 75, unknown 30.0
2224 Female, age 72, unknown 28.0
2316 Male, age 76, right hemisphere 14.0
2825 Male, age 18, unknown 13.1
2273 Male, age 74, both hemispheres 11.7
2407 Male, age 75, both hemispheres 11.7
Red nucleus
nTPM: 14.6
2785 Male, age 18, unknown 28.4
1904 Male, age 53, unknown 19.7
2584 Male, age 75, left hemisphere 17.5
1821 Female, age 72, unknown 16.3
2503 Female, age 72, unknown 14.8
2725 Female, age 75, unknown 13.3
2823 Male, age 76, right hemisphere 13.0
1865 Male, age 51, unknown 12.8
2588 Male, age 74, left hemisphere 11.7
1954 Female, age 42, unknown 11.4
2227 Male, age 72, unknown 8.3
2769 Male, age 72, unknown 8.2
Substantia nigra
nTPM: 47.6
1916 Female, age 42, unknown 80.3
2241 Male, age 72, unknown 67.4
1851 Male, age 51, unknown 67.2
2409 Female, age 72, unknown 54.7
1889 Female, age 72, unknown 49.5
2665 Male, age 74, both hemispheres 49.1
1941 Male, age 53, unknown 44.1
2699 Male, age 18, unknown 29.2
2583 Male, age 75, right hemisphere 20.2
2590 Female, age 75, unknown 14.7
Superior colliculus
nTPM: 26.3
2668 Female, age 75, unknown 68.7
2087 Female, age 72, unknown 51.6
1913 Female, age 42, unknown 23.2
1995 Male, age 72, unknown 22.4
1796 Male, age 53, unknown 22.2
2261 Male, age 18, unknown 22.2
2664 Male, age 75, both hemispheres 14.3
1895 Male, age 76, right hemisphere 13.6
2587 Male, age 74, left hemisphere 13.4
1839 Male, age 51, unknown 10.9
Ventral tegmental area
nTPM: 40.7
2218 Male, age 76, both hemispheres 66.0
2410 Female, age 72, unknown 51.5
1915 Female, age 42, unknown 45.5
1942 Male, age 51, unknown 35.9
2021 Male, age 53, unknown 23.3
2223 Female, age 72, unknown 21.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 9.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.5
Samples: 139

Max nTPM: 54.4
Min nTPM: 0.4
Std nTPM: 9.7
Median nTPM: 6.1
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 54.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 53.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 34.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 29.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 28.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 28.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 28.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 27.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 26.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 25.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 6.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 6.0
FF:10158-103A5 76 years, female 6.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 28.3
Samples: 4

Max nTPM: 49.0
Min nTPM: 5.7
Sample A Female 36.5
Sample B Female 21.8
Sample C Male 49.0
Sample D Male 5.7
Midbrain
nTPM: 16.2
Samples: 4

Max nTPM: 29.5
Min nTPM: 4.6
Sample A Female 4.6
Sample B Female 21.6
Sample C Male 9.2
Sample D Male 29.5
Periaqueductal gray
nTPM: 14.9
Samples: 3

Max nTPM: 19.4
Min nTPM: 11.1
Sample B Female 11.1
Sample C Male 19.4
Sample D Male 14.2
Superior colliculi
nTPM: 10.8
Samples: 4

Max nTPM: 18.2
Min nTPM: 6.0
Sample A Female 18.2
Sample B Female 6.0
Sample C Male 7.4
Sample D Male 11.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 25.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 25.3
Samples: 4

Max nTPM: 28.8
Min nTPM: 21.1
Sample A Male 21.1
Sample B Male 26.1
Sample C Female 28.8
Sample D Female 25.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 2.4
70228549 Antisense, RP_050524_03_H06, Mouse strain C57BL/6J (56 days, male) 2.7
74958626 Antisense, RP_060315_05_B10, Mouse strain C57BL/6J (56 days, male) 2.1

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