MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:18.1 nTPM
HPA Brain:163.4 nTPM
GTEx:18.1 nTPM
FANTOM5:234.8 Scaled Tags Per Million
Pig:68.8 nTPM
Mouse:30.0 nTPM
Allen mouse:3.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 163.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 135.4
2411 Female, age 72, unknown 156.1
2666 Male, age 74, left hemisphere 155.0
2019 Male, age 18, unknown 145.5
1827 Male, age 72, unknown 143.6
2828 Female, age 72, unknown 134.1
1870 Female, age 42, unknown 129.6
1833 Male, age 53, unknown 128.6
1830 Male, age 51, unknown 126.6
2219 Male, age 76, both hemispheres 120.5
2586 Male, age 75, left hemisphere 114.6
Dorsal raphe nucleus
nTPM: 137.9
2750 Male, age 76, both hemispheres 160.4
2047 Male, age 72, unknown 149.7
2298 Female, age 72, unknown 142.8
1828 Male, age 53, unknown 126.0
2016 Female, age 72, unknown 110.6
Inferior colliculus
nTPM: 112.5
1848 Female, age 42, unknown 120.4
2097 Female, age 72, unknown 116.8
1890 Male, age 53, unknown 107.6
2849 Male, age 72, unknown 105.2
Median raphe nucleus
nTPM: 160.9
2220 Male, age 76, midline 160.9
Periaquaductal grey, anterior
nTPM: 140.1
1947 Male, age 18, unknown 165.5
1795 Male, age 51, unknown 129.0
2502 Female, age 75, unknown 125.7
Periaquaductal grey, dorsal
nTPM: 108.0
2464 Female, age 72, unknown 123.1
1831 Male, age 72, unknown 109.5
1840 Male, age 53, unknown 107.4
2850 Male, age 76, both hemispheres 92.2
Periaquaductal grey, lateral
nTPM: 97.8
2053 Male, age 18, unknown 108.6
2272 Male, age 74, both hemispheres 95.0
2140 Male, age 76, both hemispheres 89.7
Pretectal area
nTPM: 130.1
1816 Male, age 51, unknown 159.8
1944 Female, age 72, unknown 153.6
2007 Male, age 72, unknown 152.5
1817 Female, age 42, unknown 145.2
1815 Male, age 53, unknown 143.5
2407 Male, age 75, both hemispheres 124.1
2224 Female, age 72, unknown 122.5
2825 Male, age 18, unknown 113.1
2667 Female, age 75, unknown 112.2
2316 Male, age 76, right hemisphere 103.0
2273 Male, age 74, both hemispheres 101.1
Red nucleus
nTPM: 125.6
1821 Female, age 72, unknown 145.2
2503 Female, age 72, unknown 142.9
2785 Male, age 18, unknown 142.3
1954 Female, age 42, unknown 137.7
1865 Male, age 51, unknown 137.2
1904 Male, age 53, unknown 131.2
2823 Male, age 76, right hemisphere 127.3
2588 Male, age 74, left hemisphere 126.0
2584 Male, age 75, left hemisphere 119.9
2769 Male, age 72, unknown 112.4
2227 Male, age 72, unknown 112.0
2725 Female, age 75, unknown 72.6
Substantia nigra
nTPM: 163.4
1941 Male, age 53, unknown 186.4
2241 Male, age 72, unknown 184.4
2409 Female, age 72, unknown 183.7
2583 Male, age 75, right hemisphere 180.4
2590 Female, age 75, unknown 177.4
1916 Female, age 42, unknown 177.0
1851 Male, age 51, unknown 158.5
1889 Female, age 72, unknown 142.1
2665 Male, age 74, both hemispheres 135.5
2699 Male, age 18, unknown 108.1
Superior colliculus
nTPM: 140.4
2668 Female, age 75, unknown 264.9
2087 Female, age 72, unknown 141.4
2261 Male, age 18, unknown 139.4
1796 Male, age 53, unknown 132.7
1913 Female, age 42, unknown 130.5
2587 Male, age 74, left hemisphere 127.2
1895 Male, age 76, right hemisphere 127.0
1839 Male, age 51, unknown 122.8
1995 Male, age 72, unknown 109.2
2664 Male, age 75, both hemispheres 108.4
Ventral tegmental area
nTPM: 138.6
2410 Female, age 72, unknown 165.2
2218 Male, age 76, both hemispheres 150.0
1915 Female, age 42, unknown 142.5
1942 Male, age 51, unknown 128.8
2223 Female, age 72, unknown 123.1
2021 Male, age 53, unknown 122.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 18.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 18.1
Samples: 139

Max nTPM: 38.5
Min nTPM: 4.6
Std nTPM: 6.9
Median nTPM: 18.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 38.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 36.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 34.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 33.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 32.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 31.2
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 31.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 30.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 30.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 29.9
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 29.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 234.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 234.8
FF:10158-103A5 76 years, female 234.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 68.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 55.2
Samples: 4

Max nTPM: 70.7
Min nTPM: 40.4
Sample A Female 67.3
Sample B Female 42.4
Sample C Male 70.7
Sample D Male 40.4
Midbrain
nTPM: 68.8
Samples: 4

Max nTPM: 123.4
Min nTPM: 39.0
Sample A Female 39.0
Sample B Female 51.0
Sample C Male 123.4
Sample D Male 61.6
Periaqueductal gray
nTPM: 44.9
Samples: 3

Max nTPM: 50.6
Min nTPM: 38.1
Sample B Female 45.9
Sample C Male 50.6
Sample D Male 38.1
Superior colliculi
nTPM: 63.9
Samples: 4

Max nTPM: 99.9
Min nTPM: 44.9
Sample A Female 47.9
Sample B Female 44.9
Sample C Male 99.9
Sample D Male 62.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 30.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 30.0
Samples: 4

Max nTPM: 33.0
Min nTPM: 23.4
Sample A Male 23.4
Sample B Male 33.0
Sample C Female 31.9
Sample D Female 31.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
70230902 Antisense, RP_050524_04_G07, Mouse strain C57BL/6J (56 days, male) 3.9

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