MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:7.7 nTPM
HPA Brain:215.0 nTPM
GTEx:7.7 nTPM
FANTOM5:43.3 Scaled Tags Per Million
Pig:60.7 nTPM
Mouse:36.0 nTPM
Allen mouse:4.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 215.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 168.8
2219 Male, age 76, both hemispheres 217.9
2666 Male, age 74, left hemisphere 191.1
1833 Male, age 53, unknown 182.4
2828 Female, age 72, unknown 166.0
2411 Female, age 72, unknown 164.3
1827 Male, age 72, unknown 160.2
2019 Male, age 18, unknown 156.2
1830 Male, age 51, unknown 155.7
2586 Male, age 75, left hemisphere 149.5
1870 Female, age 42, unknown 145.0
Dorsal raphe nucleus
nTPM: 178.1
2047 Male, age 72, unknown 223.1
2016 Female, age 72, unknown 189.5
2750 Male, age 76, both hemispheres 169.7
1828 Male, age 53, unknown 161.7
2298 Female, age 72, unknown 146.5
Inferior colliculus
nTPM: 167.8
2849 Male, age 72, unknown 193.4
1890 Male, age 53, unknown 184.0
1848 Female, age 42, unknown 156.1
2097 Female, age 72, unknown 137.8
Median raphe nucleus
nTPM: 194.3
2220 Male, age 76, midline 194.3
Periaquaductal grey, anterior
nTPM: 157.4
2502 Female, age 75, unknown 162.1
1795 Male, age 51, unknown 159.1
1947 Male, age 18, unknown 150.9
Periaquaductal grey, dorsal
nTPM: 166.6
2464 Female, age 72, unknown 190.4
1840 Male, age 53, unknown 181.0
2850 Male, age 76, both hemispheres 152.2
1831 Male, age 72, unknown 142.8
Periaquaductal grey, lateral
nTPM: 176.4
2140 Male, age 76, both hemispheres 189.3
2272 Male, age 74, both hemispheres 188.8
2053 Male, age 18, unknown 151.0
Pretectal area
nTPM: 168.5
2316 Male, age 76, right hemisphere 207.1
2407 Male, age 75, both hemispheres 206.3
2224 Female, age 72, unknown 190.7
2667 Female, age 75, unknown 185.1
1944 Female, age 72, unknown 177.3
2273 Male, age 74, both hemispheres 156.5
2007 Male, age 72, unknown 155.6
2825 Male, age 18, unknown 154.2
1816 Male, age 51, unknown 153.8
1817 Female, age 42, unknown 135.6
1815 Male, age 53, unknown 131.3
Red nucleus
nTPM: 133.2
2584 Male, age 75, left hemisphere 179.0
2785 Male, age 18, unknown 155.3
2823 Male, age 76, right hemisphere 155.2
2725 Female, age 75, unknown 144.5
1865 Male, age 51, unknown 140.7
1904 Male, age 53, unknown 140.2
1954 Female, age 42, unknown 131.0
2769 Male, age 72, unknown 126.5
2227 Male, age 72, unknown 124.0
2503 Female, age 72, unknown 112.3
2588 Male, age 74, left hemisphere 103.7
1821 Female, age 72, unknown 86.1
Substantia nigra
nTPM: 215.0
2665 Male, age 74, both hemispheres 262.1
2699 Male, age 18, unknown 260.0
2590 Female, age 75, unknown 248.2
2241 Male, age 72, unknown 240.2
1941 Male, age 53, unknown 206.1
2409 Female, age 72, unknown 204.3
1916 Female, age 42, unknown 198.9
1851 Male, age 51, unknown 188.3
2583 Male, age 75, right hemisphere 182.0
1889 Female, age 72, unknown 160.1
Superior colliculus
nTPM: 166.0
2664 Male, age 75, both hemispheres 247.0
2087 Female, age 72, unknown 184.7
1895 Male, age 76, right hemisphere 183.5
2587 Male, age 74, left hemisphere 182.8
1796 Male, age 53, unknown 161.8
2261 Male, age 18, unknown 157.0
1839 Male, age 51, unknown 155.1
1913 Female, age 42, unknown 139.4
1995 Male, age 72, unknown 138.4
2668 Female, age 75, unknown 109.9
Ventral tegmental area
nTPM: 186.8
1942 Male, age 51, unknown 234.5
2218 Male, age 76, both hemispheres 197.9
2021 Male, age 53, unknown 187.7
1915 Female, age 42, unknown 187.0
2410 Female, age 72, unknown 159.7
2223 Female, age 72, unknown 154.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 7.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 7.7
Samples: 139

Max nTPM: 14.3
Min nTPM: 2.3
Std nTPM: 2.2
Median nTPM: 7.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 14.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 14.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 13.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 12.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 12.6
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 12.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 11.7
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 11.2
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 11.2
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 11.1
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 11.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.3
FF:10158-103A5 76 years, female 43.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 60.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 58.7
Samples: 4

Max nTPM: 64.0
Min nTPM: 51.2
Sample A Female 51.2
Sample B Female 57.5
Sample C Male 61.9
Sample D Male 64.0
Midbrain
nTPM: 54.0
Samples: 4

Max nTPM: 62.1
Min nTPM: 45.1
Sample A Female 62.1
Sample B Female 58.6
Sample C Male 50.0
Sample D Male 45.1
Periaqueductal gray
nTPM: 60.7
Samples: 3

Max nTPM: 66.3
Min nTPM: 54.2
Sample B Female 61.6
Sample C Male 66.3
Sample D Male 54.2
Superior colliculi
nTPM: 43.8
Samples: 4

Max nTPM: 53.9
Min nTPM: 30.5
Sample A Female 43.8
Sample B Female 30.5
Sample C Male 47.0
Sample D Male 53.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 36.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 43.8
Min nTPM: 25.1
Sample A Male 25.1
Sample B Male 37.4
Sample C Female 37.9
Sample D Female 43.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 4.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.2
69672581 Antisense, RP_050428_04_B02, Mouse strain C57BL/6J (56 days, male) 4.2

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