MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:707.1 nTPM
HPA Brain:968.7 nTPM
GTEx:707.1 nTPM
FANTOM5:1132.2 Scaled Tags Per Million
Pig:303.2 nTPM
Mouse:480.9 nTPM
Allen mouse:13.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 968.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 638.4
2019 Male, age 18, unknown 766.6
2411 Female, age 72, unknown 761.3
2666 Male, age 74, left hemisphere 726.6
1833 Male, age 53, unknown 720.5
1830 Male, age 51, unknown 689.9
1870 Female, age 42, unknown 674.3
2828 Female, age 72, unknown 626.9
2219 Male, age 76, both hemispheres 503.4
1827 Male, age 72, unknown 468.4
2586 Male, age 75, left hemisphere 446.1
Dorsal raphe nucleus
nTPM: 475.8
2750 Male, age 76, both hemispheres 711.8
1828 Male, age 53, unknown 487.4
2016 Female, age 72, unknown 466.3
2047 Male, age 72, unknown 378.5
2298 Female, age 72, unknown 334.7
Inferior colliculus
nTPM: 448.6
1890 Male, age 53, unknown 492.8
2097 Female, age 72, unknown 460.9
1848 Female, age 42, unknown 446.8
2849 Male, age 72, unknown 393.8
Median raphe nucleus
nTPM: 384.4
2220 Male, age 76, midline 384.4
Periaquaductal grey, anterior
nTPM: 420.6
2502 Female, age 75, unknown 485.4
1947 Male, age 18, unknown 462.5
1795 Male, age 51, unknown 314.0
Periaquaductal grey, dorsal
nTPM: 288.5
2464 Female, age 72, unknown 467.6
1831 Male, age 72, unknown 265.0
1840 Male, age 53, unknown 213.5
2850 Male, age 76, both hemispheres 207.9
Periaquaductal grey, lateral
nTPM: 280.1
2272 Male, age 74, both hemispheres 319.9
2053 Male, age 18, unknown 318.2
2140 Male, age 76, both hemispheres 202.3
Pretectal area
nTPM: 396.7
1815 Male, age 53, unknown 594.2
2316 Male, age 76, right hemisphere 566.3
1817 Female, age 42, unknown 560.3
2007 Male, age 72, unknown 520.7
2825 Male, age 18, unknown 381.4
2407 Male, age 75, both hemispheres 323.3
2224 Female, age 72, unknown 306.4
1816 Male, age 51, unknown 305.1
2273 Male, age 74, both hemispheres 274.0
1944 Female, age 72, unknown 271.5
2667 Female, age 75, unknown 260.6
Red nucleus
nTPM: 968.7
1821 Female, age 72, unknown 1250.6
1904 Male, age 53, unknown 1175.6
2503 Female, age 72, unknown 1164.4
1865 Male, age 51, unknown 1053.0
1954 Female, age 42, unknown 1045.8
2823 Male, age 76, right hemisphere 1044.9
2227 Male, age 72, unknown 941.5
2769 Male, age 72, unknown 939.1
2725 Female, age 75, unknown 866.4
2785 Male, age 18, unknown 847.2
2588 Male, age 74, left hemisphere 789.4
2584 Male, age 75, left hemisphere 506.5
Substantia nigra
nTPM: 568.5
2241 Male, age 72, unknown 711.5
1851 Male, age 51, unknown 697.1
2409 Female, age 72, unknown 681.8
1916 Female, age 42, unknown 642.6
1889 Female, age 72, unknown 573.6
2590 Female, age 75, unknown 572.7
2699 Male, age 18, unknown 520.4
1941 Male, age 53, unknown 459.5
2583 Male, age 75, right hemisphere 428.3
2665 Male, age 74, both hemispheres 397.8
Superior colliculus
nTPM: 479.1
1895 Male, age 76, right hemisphere 761.0
2668 Female, age 75, unknown 601.3
2587 Male, age 74, left hemisphere 596.3
1839 Male, age 51, unknown 521.8
1995 Male, age 72, unknown 500.4
1913 Female, age 42, unknown 425.5
1796 Male, age 53, unknown 422.6
2261 Male, age 18, unknown 342.0
2087 Female, age 72, unknown 322.9
2664 Male, age 75, both hemispheres 296.8
Ventral tegmental area
nTPM: 521.4
2410 Female, age 72, unknown 858.3
1915 Female, age 42, unknown 539.8
2218 Male, age 76, both hemispheres 487.3
1942 Male, age 51, unknown 466.0
2223 Female, age 72, unknown 457.9
2021 Male, age 53, unknown 318.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 707.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 707.1
Samples: 139

Max nTPM: 2778.8
Min nTPM: 183.1
Std nTPM: 329.5
Median nTPM: 647.4
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 2778.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 1954.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 1432.3
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1321.8
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 1270.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 1248.7
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 1246.0
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 1206.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1179.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 1178.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 1177.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 1132.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 1132.2
FF:10158-103A5 76 years, female 1132.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 303.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 303.2
Samples: 4

Max nTPM: 396.1
Min nTPM: 175.7
Sample A Female 396.1
Sample B Female 175.7
Sample C Male 261.1
Sample D Male 379.9
Midbrain
nTPM: 237.8
Samples: 4

Max nTPM: 323.4
Min nTPM: 150.9
Sample A Female 323.4
Sample B Female 295.0
Sample C Male 150.9
Sample D Male 181.8
Periaqueductal gray
nTPM: 225.3
Samples: 3

Max nTPM: 230.3
Min nTPM: 216.6
Sample B Female 228.9
Sample C Male 216.6
Sample D Male 230.3
Superior colliculi
nTPM: 220.2
Samples: 4

Max nTPM: 294.6
Min nTPM: 106.6
Sample A Female 294.6
Sample B Female 106.6
Sample C Male 215.5
Sample D Male 264.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 480.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 480.9
Samples: 4

Max nTPM: 561.3
Min nTPM: 404.1
Sample A Male 561.3
Sample B Male 471.2
Sample C Female 404.1
Sample D Female 487.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 13.4
75042261 Antisense, RP_060412_02_D03, Mouse strain C57BL/6J (56 days, male) 15.3
631703 Antisense, RP_040907_01_A03, Mouse strain C57BL/6J (56 days, male) 11.5

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